Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03056 ATGGCTTTAACAATTGCTACTGCTTTCAATAAGATTGAAGAAATTAACATTGAAAAATCTTTTTGGAACATTAAGGCAAAAATAATAAGGTTATGGCAAGTCTCTGATTTCAATCGTAACAATGTTGCTTTCTCTGTTGAAATGGTTTTAATGGACTGTGATGGTGGAAGAATTCATGCCACTATCAAAAAAGCTTTGCTTTACAAATTTAAGAATGAGGTTTTAGAAGGAAAGACTTATGCTTTTGAAAAAATGGGTGTTGCTTCAAATGGTGGTGGTTATAGAACCACTACACACCCTTACAAGTTGAACTTTCAGTACTCATCCACTGTTCAGCATTTGCCTTCCTTGCAAATCACAAAGTCACCTTACCATTTTGTTCCAATATCTGACATTATTGGTGGTGGATATGACACTGATTATTTGCCCGATGTTATTGGTGTTTTGACTGGTGTTGGGAGTGAAAGAGAACTAGAGAAAAATGGAGCAACCACTAAGTTGAATGTCATTGCTCTTGAAGCTGAAGGGTTCAAAATCCAATGTACTCTTTTTGGCAACTATTGTGATGAACTAAACAACTTCATTGCTGCTGGAGATGTTCAGAATGCAGTTGTTATTATTCAACTTGCCAAAGTTAAAAATTTTCAAGTAATTTATATGGTATGTGTAGATAAGGTGCACCTACAGAATTGTATGGCTTGCACCCGCTTAATCTTCAATCCTAATTGTGAAGAAGCTAGGGTTCTTAGGAATAGGTTTGCTGATAGTGGGGATTCTCCATCCCCATTAACCTTAACACAAATTTGTGCTGAACCAAGGGTCAGTACTTTAGAAGAATTCCTGTACAACACACCAAGGACAACAATCCAAGGACTTAAAGATGCTACTACAGATTCATTGTTTGTTGTGCTTGGAACTATTAAAAAAATTTTGAACCCTGAAACCTTTTGGTACACTTCATGCTCTTGCTCCAAAGCTGTAATTCCAGATTCAGGATTGCACTTTTGCGAAAAATGTGATAGGCATGTACCTAGAGTTTTCCCTAGTTCTGTTCACTTTAATCACAATAGTTCTCTCATCTGTTCTGGTAGTGTGATGATTGATGATGACTCTCGTAAGATTCAGGATATGATTGTTGGTAGTCTTTTGAAGACCCTTTTCCTTCGCCAACATAGAAGTTCACAGTCATTGGCCACCGTGAACCCTCGTGAGTTTATTTTTATTTTGTTCTTGAAATCCAGTGCATGA 1248 0.3694 MALTIATAFNKIEEINIEKSFWNIKAKIIRLWQVSDFNRNNVAFSVEMVLMDCDGGRIHATIKKALLYKFKNEVLEGKTYAFEKMGVASNGGGYRTTTHPYKLNFQYSSTVQHLPSLQITKSPYHFVPISDIIGGGYDTDYLPDVIGVLTGVGSERELEKNGATTKLNVIALEAEGFKIQCTLFGNYCDELNNFIAAGDVQNAVVIIQLAKVKNFQVIYMVCVDKVHLQNCMACTRLIFNPNCEEARVLRNRFADSGDSPSPLTLTQICAEPRVSTLEEFLYNTPRTTIQGLKDATTDSLFVVLGTIKKILNPETFWYTSCSCSKAVIPDSGLHFCEKCDRHVPRVFPSSVHFNHNSSLICSGSVMIDDDSRKIQDMIVGSLLKTLFLRQHRSSQSLATVNPREFIFILFLKSSA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03056 415 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
Trre2g03056 415 Gene3D - 278 409 IPR012340 -
Trre2g03056 415 CDD RPA1_DBD_B_like 144 253 - -
Trre2g03056 415 Pfam Domain of unknown function DUF223 47 142 IPR003871 -
Trre2g03056 415 CDD RPA1_DBD_A_like 24 111 - -
Trre2g03056 415 Gene3D - 7 113 IPR012340 -
Trre2g03056 415 SUPERFAMILY Nucleic acid-binding proteins 285 387 IPR012340 -
Trre2g03056 415 Gene3D - 117 261 IPR012340 -
Trre2g03056 415 SUPERFAMILY Nucleic acid-binding proteins 124 255 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03056 Trre-Chr2 27013095 27016621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03056 12 342 Core DNA Replication Machinery Family AT2G06510 26.211 1.79e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03056 - - tpra:123915045 456.447