Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03039 ATGAGAGAAGGGTTGAGATCTCGGACTCGGTTGGGGAAGGGTTCTGGTGAAGGGGAAGTTGTTCATAAGAAAAGGGTTCGTGTGAAGAATGAGGTTTTGGTTTCGGGTGATGAGGGTTTGGTGGAACGTACGCAGGCTGTAGTTGAGGCTTTATTTTCAGGTGATGAGGGTTTAGTGGAACCTACATCATTGATTGAGAAGAATGGTGAAACTGAGGCATTATCGGGTGACGATGGTTTAGTGGAGCCTACTGCATTGATTGAGAAGAAGGACGAAACAGAGGCTTTAGTTTTGGGTGACGAGGGTTTTGTGGAGCCTATCTCATTGATTGAGAAGAAGGGTGAAGTCGAGGCTTTATTTTTGGGTGATGAGGGTTTGGTGGAACCTACCTCATCAATTGAGAAGAAGGGTGAAACTGGGGCTTTAGTTTCGGGTGATCAAAGTTTAGTGGAACCTACCTCATCTATTGAGAAGAAGGGTGAAGTTGAGGCTTTAGTTTCGTGTGATGAGGTTTTAGTGGAACCTACCTTGTCGATTGAGAAGAAGGGTGAAGTTGAGGCTTTATTTTTGGGTGATGAGGGTTTAGTGGAACCTACCTCATCAATTGAGAAGAAGGGTGAAACTAGGGCTTTAGTTTCGGGTGATGAAAGTTTAGTGGAACCTACCTCATCCATTGAGAAGAAGGGTGAAGTTGAGGCTTTAGTTTCGTGTGATGAAGTTTTAGTGGAACCTACTTCGTCGATTGAGAAGAAGGGCGAAGTTGAATGTGCAGGCGTTGTTGAGTGCGCTGGTGAAGTTGAATGTGATGTGAAAACAAAATTTGATTTTGATTTAAACTTGAATTTGAGTGTAAATGTTGACATAGATGAGAATAACATAGATGAGAATGGGAACAGTAGCCCTAGGAGTTGTTTAAAAGATGGGCATAGTATTGCAGAAGCTGATAAGAAGGAGAATGAAAGGTTGAGTGGGGGTCGAGTATTGCGGTCCAGGTTAAAGAGGGGAGATGACAAAAGAGCTTATAATGGAGGGAACAATGGAGAACATGGTCGGTTGGAGATGATACAAGTCAAGAAGGAGCTTGAAGAAGCTGATGAGGTTTTGACTGATGGTAAAAAGAATGATAGGGTTAGTATGAACATGGGAGGGAAGGGAAAGAAGAAATTGAAACGGAAGCGTGGGAGGCCTCCCAAAACAGAAATAAAAGAGAAAGATCAGTTAGATTATCAGCCACCGCGTAAGCTTGGGAGGCCTCCGAAAAGAGAAATAAAAGAGAAAGATCAATTAGATGATGATCAGCCACCATGTAAGCTTAGGAAGCCTTGCAGAACAGAGTTAAAAGAGGATGATCAGTCACCGCGTAAGCTTGGTAGGCCTCGCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGGTAGGCCTCGCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGTGTAAGCTTGGGAGGCCTCACAGAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCGTGGAAGACCCCCCAAGACTGAGGAACAAAAACATCTCATGATCCTGGCACATAATAGTAAAGGAAAGGTGAGCCGTGAAGATGGTAAAAAAGTTGTAACTGTAACCGATAGTACAAGTGAAAGTGAAGTTGATGATACACGCTCAAGGAGATCTTCCAGTAAAAAGTTAAAAAAGAAAGGATTTTCTCCTGTAAGGAAAAATAAATTGCGAAAGGTTTTGAAAACTGAGAATGGTGGGATGGCATCAAATACTGTGAATGCACCTGTTGCTAAACAAAGTAAAAGGCGTGAAGAAAAGAAGTTGGTGAGGAATAAAATAATGGAATGTCTCTCGGATGCAGGATGGACTGTTGACCACAGACCTAGAAACGGAAAAGATTATATTGATGCAGTATATGTTGCTCTGGACGGAAAGACACATTGGTCAATAACCTTGGCATACAAGAGGCTTAAAAAGCATTATGAAGCCGGGGACGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATATCACAGGAAGATTTCAATTCACTAACTAGAGTAGTCACCAAGTCCAAGAAAGGAAGTAAAGTTAAATGTGTTCCATTTGGAGGAAAGGATGGAAAGAGAGTTGATGGAGTCAATCGAAAAAATAAAAAAATAAAACCAGGTTCTGGTGCAAGCAGGGGAAAGTTAGTGAAAGGGAAAAAGAAAAGGAAACGATCACTTCCTGAGGAGGGCAAAACAAATGTCACATCACCTAACAGGGATCGTAAACGGCACAAAACACAGAACAAGACTCGAGGTGCTCTGTTGGTTCGTGATGCTACAGAGGAGGTGGATTCAGAAGTTAATGGATATGCGCCATACAGTGGAAAACGAACTGTGCTTGCTTGGATGATTGATCTGGGTACAATCCTCCAAAATGGGAAGGTCCATTATATGCAAGATAGGTCGGAAATTGCTTTCGAAGGTAAGATCACAGGAGATGGCATTCACTGTGGATGCTGTAATGAAATCATAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAGCAATCTGATCCTCTGAAAAATATATATACAGAGGAAGAAACTTCACTCCTACAATGCCTGCTAGATTCATGGAATAAACAAGATAAATCTGAACTTAAAAGTTTTCACTTCGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGCGGTGTCTGCGGAGATGGTGGAGACCTGATCTGCTGTGATGGTTGCCCATCAACATTCCATAAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGTTGATGGAAGTTCAAACCAAACTGTCGTCAACGATGATTTTACTATGCCTGCACTGCTCACATGCTATTTATGTGAGGAAAAATTTCACATGTCCTGCATTGTGGCAAATGGTGATAACACCGATGATTCTAGGGTGGCAAATGGCGATCAGACTGATGATTCCAATAATACATTTTGTGGAAACAAATGTCGAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGGCGGTCAGATGTGGGCTTTGATGTTTCTCTGACAAAATCTCAGATGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATATATTGATCATAGAAGCGGGACCAATCTGATCCGCAGTATTCTATATAATTGTGGGTCAAACTTCAAACGGCTAAATTATAGTGGGTTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTTATTGGAACTCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATCGAATGGGCACTCAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAACTCAGAGAAACCTGGACCTCCGTTTTTGGGTTTGAGCCACTTGAACAAACAAGCAAGCAAATAACAAAGAACATGAATCTGTTGGTATTTCCACATGTAGATATGTTACAGAAGAAGATATCAACGCATGAAATTGCTAATGAAAATTTGATTGCTACTGAAGTTTCTGATCATAAGAATCTCACTACATTCAAAGTAGCAAATCGGGATGGGGAAGACTCATCTGTATCGGATAGTTGCCAGAAAATCGAGAAAACCATATCTATTGACACCATACAGAATAGCATATCTCCAAAAGATGTCAAATGTCATGTAGTATATGAGACTGTTAATGAAAAATTGGGCGTGGACCACAAAAGCACTGTAAATGCTGGTGAGGATGTTGCTAAGTCTTGTTGCCAAGTAGAGGATAAAGAAAGACACTGTCTCAGTACATCTTGTATTAACACTGAAACTTCACAAGAACATTACGTTGGTGCTATGTTGGAGGTTACTGAAAATTGTTCCAACGAGGTCAAAGTAACAATTGATGTTGGTTTAAATAACAACAGTGATGAAAAATCTGCACCCTCTGCTGAAGAAAATATCCCTGTTGACTCACAAATTGTGTTTAGGACAAGGGGATCAAAATATTCTGCTGAAAGTAACCATGATTCACCCAAGATTTCTGATAGTTTTGAACTGAGATTTAAGACTAACTGTGCTCAACCGGGAGATCTTGCTGAATCTGTCAATGGTTGTGGCTCTAGACTAGATGGTGATAGTGCCACTGGTGAAGCAGGTCTCAAAACCAACATCTTGATGCATGTTGAATCAGAGAATACTAGCAAAGATTTGCCTGCTAATTGCGAAGACAACTCTAGTGCTGTTAGTGCGCCAAATGCTGATGAAGCAGAACCATATTACTCCAAAACAATTGATCTCCAGACAAACAAAAATTCTGGAGGCTGCCAATCTATTCTAGTATCTTCAGATATTTGTGAGAAAATTGAAGATGGTGTCAATGAGGTGAATAAAGCATCCAGGGAAGCTGATGCTGATTTTTTTCCTGCTGATGTTGAAGTAATTCTTGATGATAAGCCTGGTTCCCATTCTAGACCCAATGGTCATAGAGCCTCTGGCGAAGGTCTCATAACTAACACTTCGATGCATCTTGAATCTCAGAATATCACCATAGATTTGCCTGTTAATTGTGAAAACAATTCTAGTGTTGTTGGTGCGCCAAGAATTGATCTCCAGACAAATAAAAATCCTGGAGATTGCGAATCCATATCAGTATCATCAGGTGTTTGTGAGAAAATTGCAGATGGTGTCAATGAGAGGAATAAAACATCCAATGCAGATGATGTTCTTCCCGTTGATATTGAAGTATTTCCCAATAATAAGCCTGGGATAAAGATGTCTTCAGAGCTAGCATAA 4956 0.409 MREGLRSRTRLGKGSGEGEVVHKKRVRVKNEVLVSGDEGLVERTQAVVEALFSGDEGLVEPTSLIEKNGETEALSGDDGLVEPTALIEKKDETEALVLGDEGFVEPISLIEKKGEVEALFLGDEGLVEPTSSIEKKGETGALVSGDQSLVEPTSSIEKKGEVEALVSCDEVLVEPTLSIEKKGEVEALFLGDEGLVEPTSSIEKKGETRALVSGDESLVEPTSSIEKKGEVEALVSCDEVLVEPTSSIEKKGEVECAGVVECAGEVECDVKTKFDFDLNLNLSVNVDIDENNIDENGNSSPRSCLKDGHSIAEADKKENERLSGGRVLRSRLKRGDDKRAYNGGNNGEHGRLEMIQVKKELEEADEVLTDGKKNDRVSMNMGGKGKKKLKRKRGRPPKTEIKEKDQLDYQPPRKLGRPPKREIKEKDQLDDDQPPCKLRKPCRTELKEDDQSPRKLGRPRKTELKEDVQSPRKLGRPRKTELKEDVQSPCKLGRPHRTELKEDVQSPRKRGRPPKTEEQKHLMILAHNSKGKVSREDGKKVVTVTDSTSESEVDDTRSRRSSSKKLKKKGFSPVRKNKLRKVLKTENGGMASNTVNAPVAKQSKRREEKKLVRNKIMECLSDAGWTVDHRPRNGKDYIDAVYVALDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISQEDFNSLTRVVTKSKKGSKVKCVPFGGKDGKRVDGVNRKNKKIKPGSGASRGKLVKGKKKRKRSLPEEGKTNVTSPNRDRKRHKTQNKTRGALLVRDATEEVDSEVNGYAPYSGKRTVLAWMIDLGTILQNGKVHYMQDRSEIAFEGKITGDGIHCGCCNEIITISDFGAHAGSKQSDPLKNIYTEEETSLLQCLLDSWNKQDKSELKSFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKKFPSGDWHCIYCCCKFCGLVDGSSNQTVVNDDFTMPALLTCYLCEEKFHMSCIVANGDNTDDSRVANGDQTDDSNNTFCGNKCRELSERLEMLLGVKHEIEDGFSWSFIRRSDVGFDVSLTKSQMVECNSKLAVALSIMNECFMPYIDHRSGTNLIRSILYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLHVELLVIPAISELRETWTSVFGFEPLEQTSKQITKNMNLLVFPHVDMLQKKISTHEIANENLIATEVSDHKNLTTFKVANRDGEDSSVSDSCQKIEKTISIDTIQNSISPKDVKCHVVYETVNEKLGVDHKSTVNAGEDVAKSCCQVEDKERHCLSTSCINTETSQEHYVGAMLEVTENCSNEVKVTIDVGLNNNSDEKSAPSAEENIPVDSQIVFRTRGSKYSAESNHDSPKISDSFELRFKTNCAQPGDLAESVNGCGSRLDGDSATGEAGLKTNILMHVESENTSKDLPANCEDNSSAVSAPNADEAEPYYSKTIDLQTNKNSGGCQSILVSSDICEKIEDGVNEVNKASREADADFFPADVEVILDDKPGSHSRPNGHRASGEGLITNTSMHLESQNITIDLPVNCENNSSVVGAPRIDLQTNKNPGDCESISVSSGVCEKIADGVNERNKTSNADDVLPVDIEVFPNNKPGIKMSSELA 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03039 1651 Pfam AT hook motif 390 399 IPR017956 GO:0003677
Trre2g03039 1651 Pfam AT hook motif 453 463 IPR017956 GO:0003677
Trre2g03039 1651 Pfam AT hook motif 471 481 IPR017956 GO:0003677
Trre2g03039 1651 Pfam AT hook motif 507 518 IPR017956 GO:0003677
Trre2g03039 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 898 989 IPR013083 -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 745 764 - -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 367 575 - -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 1 22 - -
Trre2g03039 1651 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1056 1219 IPR000182 GO:0016747
Trre2g03039 1651 MobiDBLite consensus disorder prediction 709 725 - -
Trre2g03039 1651 SMART PHD_3 908 949 IPR001965 -
Trre2g03039 1651 SMART PHD_3 950 1020 IPR001965 -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 705 775 - -
Trre2g03039 1651 PANTHER PHD FINGER PROTEIN 12 570 1440 IPR042163 GO:0003714|GO:0045892
Trre2g03039 1651 ProSiteProfiles Zinc finger PHD-type profile. 906 951 IPR019787 -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 1454 1475 - -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 396 543 - -
Trre2g03039 1651 SMART AT_hook_2 412 424 IPR017956 GO:0003677
Trre2g03039 1651 SMART AT_hook_2 390 402 IPR017956 GO:0003677
Trre2g03039 1651 SMART AT_hook_2 471 483 IPR017956 GO:0003677
Trre2g03039 1651 SMART AT_hook_2 453 465 IPR017956 GO:0003677
Trre2g03039 1651 SMART AT_hook_2 507 519 IPR017956 GO:0003677
Trre2g03039 1651 SUPERFAMILY FYVE/PHD zinc finger 897 950 IPR011011 -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 333 352 - -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 1454 1472 - -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 367 382 - -
Trre2g03039 1651 Pfam Tify domain binding domain 831 880 IPR032308 -
Trre2g03039 1651 CDD PHD1_AIRE 909 948 - -
Trre2g03039 1651 MobiDBLite consensus disorder prediction 589 608 - -
Trre2g03039 1651 PRINTS AT-hook-like domain signature 410 421 IPR017956 GO:0003677
Trre2g03039 1651 PRINTS AT-hook-like domain signature 390 400 IPR017956 GO:0003677
Trre2g03039 1651 PRINTS AT-hook-like domain signature 505 515 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03039 Trre-Chr2 26889677 26898831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03039 466 1226 PHD Transcription Factor Family AT5G36670 41.397 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03039 - - tpra:123913713 2684.44