Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03008 ATGGAACAATATGAAGTTCTAGAACAGATTGGCAAGGGTTCTTTTGCTTCTGCTCTACTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTGAAGAAGATCCGCCTTGCCCGCCAGACCGAAAGAATCCGTAGATCTGCTCACCAAGAGATGGAACTTATATCTAAAGTTCGTAATCCATTCATTGTAGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTAATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCAATTAAAAAGGCTAATTGTATTCATTTTTCAGAAGAGCGGCTTTGCAAATGGCTAGTTCAACTTTTGATGGCACTTGACTACTTGCACGGAAATCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTAACAAAAGATCAAGATATTCGTCTAGGTGACTTTGGTCTTGCTAAAATGTTAACAAGCGATGATCTTGCTTCTTCGATTGTGGGGACTCCAAGTCATATGTGCCCAGAGCTTCTTGCTGATATACCATACGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCGGCACACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCACTAATTAACAAAATAAACAAGTCTTTAGTGGCTCCGCTGCCAACAATGTATTCTGGCACTTTTCGAGGCATGGTAAAGAGTATGCTTCGGAAAAATCCCGAGCTTAGGCCAAGTGCTGCAGAGCTACTAAATCATCCGCATCTTCAACCTTATATACTTAAAGTTCATTTGAAACTAAACAATCCTAGAAGAAGTACTTTTCCATTCCGATGGACAGACTCAAACCATGCTAGGAGAAGTCGATTTGTAGAACCAGAATCTGTTTCCACTCTCTCTGGCAGAGTTAAACGATTGTCATTCAGTAATGATAGGGCGTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTTTGTTCTAATCAAAGAGCACAAGGATTTTCTTCTACTTGTTCAAAACATTATGAACTATCCATTGGTTGTGTCCATGAAGAACACAATGATAACAAATCAGAAGGCACCAAACTATCAATTGTTGATCGGATGCAAAGACTGAGAGCAGCTAATGAGTCTGCCACCCCTCGAAGACAGACAACACCATCAAAGATAGCCCATACTAGTTCCAAGCGCGATTCACTACCAGCATCTTCTACTCCAGCTGGTAAATTTACACCACCGTCTCGCAGAGCTTCCCTTCCCCTTCCAACAAGATCCAAGGCCACGACTACCCCTTACAGAGCCAATGTTGGTCTTCTTCGAAGTGTAGACTCTCCTAACATTTCTGTTAACGCGCCACGAATTGACAAGATGGCCGAGTTTTCTTTGGCCCCCGGTGAGGATCATCCTCTCTTCCCTGTGCGCGGAACATCATCAACATCAGCTCAATGCTCTTCTAGTTCCCCAAGGAGTGCTGTTGCTGCTGCTGACTACTCGATAACAAAGGACAAGTGTACAATCCAGGTTGTGGACAAATCCAATGTCCCTTCCAGTGGTGCTTTAGTTTCATATGGCAATGAATGCTCCCAACACGTGGCAACTGCCGTTTCAAGTCATTCCTCCGCTAATTCTCATCAGCGTAAGTTTGACACCACATCTTACCAGCAACGAGCAGAGGCATTGGAAGGATTGCTCGAGTTCAGTGCTCGGCTCCTACAGCAACAGAGGTTTGAAGAGCTTGAGGTTTTGTTGAAGCCATTCGGACCTGAGAAGGTCTCTCCAAGGGAAACAGCTATTTGGTTGACTAGGAGCTTTAAAGAAACTGTGGTTTAA 1839 0.429 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQTERIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCIHFSEERLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSHMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFRWTDSNHARRSRFVEPESVSTLSGRVKRLSFSNDRALNPSISGTEVGSLCSNQRAQGFSSTCSKHYELSIGCVHEEHNDNKSEGTKLSIVDRMQRLRAANESATPRRQTTPSKIAHTSSKRDSLPASSTPAGKFTPPSRRASLPLPTRSKATTTPYRANVGLLRSVDSPNISVNAPRIDKMAEFSLAPGEDHPLFPVRGTSSTSAQCSSSSPRSAVAAADYSITKDKCTIQVVDKSNVPSSGALVSYGNECSQHVATAVSSHSSANSHQRKFDTTSYQQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTRSFKETVV 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03008 612 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre2g03008 612 MobiDBLite consensus disorder prediction 380 414 - -
Trre2g03008 612 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Trre2g03008 612 MobiDBLite consensus disorder prediction 377 431 - -
Trre2g03008 612 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Trre2g03008 612 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03008 612 SUPERFAMILY Protein kinase-like (PK-like) 1 314 IPR011009 -
Trre2g03008 612 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03008 612 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trre2g03008 612 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 568 - -
Trre2g03008 612 CDD STKc_Nek 3 258 - -
Trre2g03008 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre2g03008 612 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Trre2g03008 612 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03008 Trre-Chr2 26555500 26559355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03008 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 8.93e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre2g03008 Pkinase 2.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03008 K08857 - gmx:100810347 986.482