Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03003 ATGATTAGAAACATTTCATCACAAAACCTATTCTTCGCGTTAGGGTTTCTTCTTTCAACCACAACAATCCCTTTCGCTTATAGCGAATCATCCACATGCTTAACCGTTTACAAAAACGGCGGCGCTCCGGCGGTGTTCAAATCTCCAAAATGCCCTCGCTGGAACCTCTTCGACTACAATTCTCATCCTCAATCAACTACGCGTTGCCAATCCGCAAAACTCCAAGGTCGAAGAAAATCACAAGAGGATCGCACTCTCTGTGTTCTCGATGTTCACATTCCATTCCCCGGTGCGATGGGGATCAAGGATGTTGTGGTTGGAATTGTGGCGGTTTTCGATGGTCATAACGGTGCAGAAGCTAGTGAGATGGCGTCGAAACTTTTGATGGAGTATTTTATTCTGCATACTTATTTTCTTCTTGATGCTACGTATTCGTTTATATTTGAGGCTTCCACAGGAACATTGCTTTACAGGAGTGATCATGATCATGATCATGTAAACCGATTGCATAGATGGAAAGAGATTTTAGGTTGGCAATGGCATGAACTGCATTCTGAAAGGTTGCAGAATACATTTTCTGCTAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCGTTGTTGAGAGCAATTCATGATATTGATGCGAAGTTTTCTGAGGAAGCCTCTAGAAATAACCTTCATTCAGGATCTACAGCAACAATTGTATTGGTTGCAGATGATAAAATTCTGGTTGCCAATATTGGAGACTCTAAGGCTTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAAGGAGGCTAAAGCCTCTTTATTAAAGCTATATAGGCAGACAGAGCGTGATGGTTCTGTTTCTGTGTGGAATCGTGAAAAGTACAAATTAGCATCTTCCCATGGGTTCACTCATTTTGCAGTGAAGGAATTGACTAGCGATCATCATCCAGACAGAGAGGATGAAAAAACTCGGGTGGAAGCTGCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTGCCTCGCGTAAATGGTCAGTTGGCTATTACACGGGCTATTGGTGATGTGTTCTTTAAAAGTTATGGAGTTATATCTGTACCAGAAGTGACTGATTGGCAGCCTCTAACTGCTAATGATAGCTACTTGGTGGCTGCATCTGATGGAGTCTTTGAGAAGTTGAGTGTGCAAGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTTAGTGACATGAGATCAGAATGCACCTCTTCATCTTCCTATTCATTAGCAGATTTTATTATTAATACTGCCTTAAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTTGTTCCTCTGGAATCTGCTAAATCTTCTGCGAACTCACTTAGAAGAAGCTATACTGAAAATGAGGATGCAGGCTTCCCATTATTTGGGCTGCAGGAATCAGCTTACAGAAGCTCAGCTAATGATATCTCCTCTGATCTATTGCACCTGGAGCACCCTCATCTGCTAGATACCAAGTTCAAGCGAATATTGGTTGAAGTGAAACATGGTGATTTTGGGTGTTTTTATTTATCTGAAAATCTTGATGATTCAGTGGATTCTAAGTGGCCTCCCAAAAAAGATGACCGGGAAGACTATTTGTATGAACTACCCCAGCCTCTACCAGATACCCTTCATCAACAACCTGCAGTAGATGGTCCTGTAATTTTGTACAATGACCAAAACTTCTGCTTTCACCTAAGTTCAACTATCAATCAAGCCAAAGACCAATGCATAAACCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCAATTCCTTTAATTGATGCTGGTTCAGATAATGAGTCTTCTGATTATTCGATGCCTGATTCAAGGTATGTATTAAGGAGGAGTTTTGGTCGTGGATCATATGGCGAAGTATGGTTGGCTTTTCATTGGAATTGTAATCAAGGTAATATTACTTCAGAAATGGGCAAGGATGACAATAATAGAAACGGCAGCTCAAGTAATCCTGAGTGTCAGGATGGTCCTTCTAACTACACCATGTACATTTTGAAACGTATAATGGTAGAGAAAGGGTCTGCTGTGTACTTAAGTGGGCTGAGGGAAAAATATTTTGGAGAAATTTTCTTAAATGGTTCTGAGTATTCATTGCAAAACAAATTTCGACTGGAAGGAGCCATATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCTCGGTCCAATGAAATATGGCTTGTATTCAGTTATGAGGGAGTGTCATTGTCAAAGCTTTTATATACTGTAGAAGATGCAAATAGTACTGCTGAGAAAGAAAGACTCGAGCAAGTGAAACAGGTTCGGATACTACGCCCATCAAAATGGTGGCGTTGGTTGAAAACGACGGAAGAAGGGCAAGAGGAAATGCGCAAGCTTATCTGGCAACTGTTATTGGCACTCAAGTCTTGTCACGACCGCAATATCACACACAGAGACATTAAACCCGAGAATATGGTGATATGCTTTGAAGATCCGGAGTCAGGGAGATGCTTGAAAGATACTCCAACAAAAGTTAATAATTTTTCCACCAAAATGCGCATTATTGACTTTGGAAGTGGAATTGATGAATTCACAATAAAGCACTTATATGCTTCTACTGGGCCTTCTAGAGCTGAACAAACTTACGACTACACACCTCCTGAAGCTTTGCTAAATGCTACGTGGTATCAAGGGCCAACAAGCTCGACTTTGAAGTATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAAATGGTCTTAGGGACACCAAATATTTTCCAGATAAATGCTTTAACGCGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGAGGGTGTGAAGGAGCTAGCATACAGACTTAGATCGTTCATGGAATTGTGCATCTTAATCCCTGGGGTTTCTGGCAACTCAAAAAAGTATCACAAAGTGAATCAAGTTGGTGCTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTAGACAAATTAAGGCTAGAGATCCTCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTGGTGCGCCATCTACTACTATGGGACCCAGAGGATCGGCCAAGTGTTGACGAGGCACTTCGGCATCCCTATTTCCAACCTCCACCAAGAGGATAA 3162 0.4127 MIRNISSQNLFFALGFLLSTTTIPFAYSESSTCLTVYKNGGAPAVFKSPKCPRWNLFDYNSHPQSTTRCQSAKLQGRRKSQEDRTLCVLDVHIPFPGAMGIKDVVVGIVAVFDGHNGAEASEMASKLLMEYFILHTYFLLDATYSFIFEASTGTLLYRSDHDHDHVNRLHRWKEILGWQWHELHSERLQNTFSANFDDSFHLEILKEALLRAIHDIDAKFSEEASRNNLHSGSTATIVLVADDKILVANIGDSKAFLCSENFQSPKEAKASLLKLYRQTERDGSVSVWNREKYKLASSHGFTHFAVKELTSDHHPDREDEKTRVEAAGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVISVPEVTDWQPLTANDSYLVAASDGVFEKLSVQDVCDLLWEVHRFSDMRSECTSSSSYSLADFIINTALKKGSMDNMAAVVVPLESAKSSANSLRRSYTENEDAGFPLFGLQESAYRSSANDISSDLLHLEHPHLLDTKFKRILVEVKHGDFGCFYLSENLDDSVDSKWPPKKDDREDYLYELPQPLPDTLHQQPAVDGPVILYNDQNFCFHLSSTINQAKDQCINPEGFASFIGLLESIPLIDAGSDNESSDYSMPDSRYVLRRSFGRGSYGEVWLAFHWNCNQGNITSEMGKDDNNRNGSSSNPECQDGPSNYTMYILKRIMVEKGSAVYLSGLREKYFGEIFLNGSEYSLQNKFRLEGAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYTVEDANSTAEKERLEQVKQVRILRPSKWWRWLKTTEEGQEEMRKLIWQLLLALKSCHDRNITHRDIKPENMVICFEDPESGRCLKDTPTKVNNFSTKMRIIDFGSGIDEFTIKHLYASTGPSRAEQTYDYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLEMVLGTPNIFQINALTRALLDRHLEGWNEGVKELAYRLRSFMELCILIPGVSGNSKKYHKVNQVGASPASWKCSEEFFSRQIKARDPLKIGFSNIWALRLVRHLLLWDPEDRPSVDEALRHPYFQPPPRG 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03003 1053 Gene3D Transferase(Phosphotransferase) domain 1 788 1048 - -
Trre2g03003 1053 SUPERFAMILY PP2C-like 62 445 IPR036457 -
Trre2g03003 1053 ProSiteProfiles Protein kinase domain profile. 621 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03003 1053 MobiDBLite consensus disorder prediction 650 670 - -
Trre2g03003 1053 SMART serkin_6 621 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03003 1053 ProSiteProfiles PPM-type phosphatase domain profile. 68 444 IPR001932 -
Trre2g03003 1053 SMART PP2C_4 60 442 IPR001932 -
Trre2g03003 1053 SUPERFAMILY Protein kinase-like (PK-like) 616 1049 IPR011009 -
Trre2g03003 1053 CDD PP2Cc 68 444 IPR001932 -
Trre2g03003 1053 Pfam Protein kinase domain 793 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g03003 1053 FunFam uncharacterized protein LOC106771884 isoform X8 788 1048 - -
Trre2g03003 1053 PANTHER PROTEIN PHOSPHATASE 64 443 IPR015655 GO:0004722|GO:0006470
Trre2g03003 1053 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Trre2g03003 1053 Gene3D - 62 452 IPR036457 -
Trre2g03003 1053 Pfam Protein phosphatase 2C 202 437 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03003 Trre-Chr2 26504843 26518396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03003 685 1051 PP2C-type Phosphatase Gene Family AT3G63340 67.368 3.51e-180 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Trre2g03003 Pkinase 3.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03003 - - gmx:100781476 1738.01