Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03002 ATGGAACCATTATGTGAATACCAACCAACGATTCCACCACCTCAACCAATTGAAGGACTTCATGAAACTAGGCCCCAACCATTTCTCACTAAAACATTTGATGTAGTGAATGATCAAAGTACCAACCATGTTGTTTCATGGAACAGAGATGGCACCAGTTTTGTGGTTTGGGATACACATGCTTTCTCTAATGATCTCCTTCCCAGATTCTTCAAACATAATAATTTCTCAAGCTTTGTGAGACAACTACACACTTATGGTTTTAGAAAAATAGATCCAAATAGATGGGAGTTTGCAAATGAAGGATTCCTAAGAGGACACAGACATTTATTAAGGAACATAAGGCGAAAGAAGGGACCTTCTCACCCTATTCCTAATTCTCAACAAGGAAAAGGTTGTTTTGAACTAGATGCGGAAATTGATCGTTTAAGGCATGAAAAACAAGTATTGATGATGGAGCTTATGAGTCTTAGACAGAAGCAATATAATACCACACTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGGATAGAAATCAATCAGAAACAAATGATGGCATTCTTAGCTAGAGCTATGAAAAAACCTGCCTTTATCCACCAACTACTACAACAAAAATTGGAGAAAAATGAGCTTGAAGAAGCCATGAACATGACCAAGAAGAGAAAGCTTGTTGAACAAGGAACTATACAAGGTATTGGACAATCAAGTAGTGTTAAAGTTGAGCCTTTAGAATTAGTTGATTATGAATTCGAAGGGTCAGAGTTGGAAATGCAGGTTTTTGAAAGAGGGGAGATGGATAACGAAGAAGTAGACGAGGCACTAGAATCACAAGAAAGAATAGAAAGATTACTTGGAGATGAAGGGTTCTGGGAAGAACTAATGTTTAGTTTCAAATTTGAGGGTAGATTTGACATTCCAACTGCCGAAGATAATGATGAGAATCAAGATGATTCAAGTGAACCACTAAATCAACAATTCGGGATTAACTCTTTTCATTCGGTTCACTAG 1011 0.3739 MEPLCEYQPTIPPPQPIEGLHETRPQPFLTKTFDVVNDQSTNHVVSWNRDGTSFVVWDTHAFSNDLLPRFFKHNNFSSFVRQLHTYGFRKIDPNRWEFANEGFLRGHRHLLRNIRRKKGPSHPIPNSQQGKGCFELDAEIDRLRHEKQVLMMELMSLRQKQYNTTLYLLEMEQRLQGIEINQKQMMAFLARAMKKPAFIHQLLQQKLEKNELEEAMNMTKKRKLVEQGTIQGIGQSSSVKVEPLELVDYEFEGSELEMQVFERGEMDNEEVDEALESQERIERLLGDEGFWEELMFSFKFEGRFDIPTAEDNDENQDDSSEPLNQQFGINSFHSVH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03002 336 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03002 336 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03002 336 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03002 336 Gene3D - 20 118 IPR036388 -
Trre2g03002 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 234 IPR027725 -
Trre2g03002 336 Coils Coil 202 222 - -
Trre2g03002 336 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03002 336 SUPERFAMILY "Winged helix" DNA-binding domain 25 117 IPR036390 -
Trre2g03002 336 MobiDBLite consensus disorder prediction 319 336 - -
Trre2g03002 336 Coils Coil 140 160 - -
Trre2g03002 336 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03002 336 FunFam Heat shock transcription factor 1 21 118 - -
Trre2g03002 336 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03002 336 MobiDBLite consensus disorder prediction 307 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03002 Trre-Chr2 26501861 26503660 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03002 10 302 HSF AT3G22830 45.906 8.89e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre2g03002 HSF_DNA-bind 1.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03002 K09419 - gmx:100811945 381.333