Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g03001 ATGAATTATATTTACTCAGTGAAAGAAGAAAACATGGAACCATTATGTGAATACCAACCAACGATTCCACCACCTCAACCAATTGAAGGACTTCATGAAACTAGGCCCCAACCATTTCTCACTAAAACATTTGATGTAGTGAATGATCAAAGTACCAACCATGTTGTTTCATGGAACAGAGATGGCACCAGTTTTGTGGTTTGGGATACACATGCTTTCTCTAATGATCTCCTTCCCAGATTCTTCAAACATAATAATTTCTCAAGCTTTGTGAGACAACTACACACTTATGGTTTTAGAAAAATAGATCCAAATAGATGGGAGTTTGCAAATGAAGGATTCCTAAGAGGACACAGACATTTATTAAGGAACATAAGGCGAAAGAAGGGACCTTCTCACCCTATTCCTAATTCTCAACAAGGAAAAGGTTGTTTTGAACTAGATGCGGAAATTGATCGTTTAAGGCATGAAAAACAAGTATTGATGATGGAGCTTATGAGTCTTAGACAGAAGCAATATAATACCACACTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGGATAGAAATCAATCAGAAACAAATGATGGCATTCTTAGCTAGAGCTATGAAAAAACCTGCCTTTATCCACCAACTACTACAACAAAAATTGGAGAAAAATGAGCTTGAAGAAGCCATGAACATGACCAAGAAGAGAAAGCTTGTTGAACAAGGAACTATACAAGGTATTGGACAATCAAGTAGTGTTAAAGTTGAGCCTTTAGAATTAGTTGATTATGAATTCGAAGGGTCAGAGTTGGAAATGCAGGTTTTTGAAAGAGGGGAGATGGATAACGAAGAAGTAGACGAGGCACTAGAATCACAAGAAAGAATAGAAAGATTACTTGGAGATGAAGGGTTCTGGGAAGAACTAATGTTTAGTTTCAAATTTGAGGGTAGATTTGACATTCCAACTGCCGAAGATAATGATGAGAATCAAGATGATTCAAGTGAACCACTAAATCAACAATTCGGGATTAACTCTTTTCATTCGGTTCACTAG 1044 0.3697 MNYIYSVKEENMEPLCEYQPTIPPPQPIEGLHETRPQPFLTKTFDVVNDQSTNHVVSWNRDGTSFVVWDTHAFSNDLLPRFFKHNNFSSFVRQLHTYGFRKIDPNRWEFANEGFLRGHRHLLRNIRRKKGPSHPIPNSQQGKGCFELDAEIDRLRHEKQVLMMELMSLRQKQYNTTLYLLEMEQRLQGIEINQKQMMAFLARAMKKPAFIHQLLQQKLEKNELEEAMNMTKKRKLVEQGTIQGIGQSSSVKVEPLELVDYEFEGSELEMQVFERGEMDNEEVDEALESQERIERLLGDEGFWEELMFSFKFEGRFDIPTAEDNDENQDDSSEPLNQQFGINSFHSVH 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g03001 347 SMART hsfneu3 35 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03001 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 245 IPR027725 -
Trre2g03001 347 SUPERFAMILY "Winged helix" DNA-binding domain 36 128 IPR036390 -
Trre2g03001 347 Coils Coil 151 171 - -
Trre2g03001 347 MobiDBLite consensus disorder prediction 330 347 - -
Trre2g03001 347 Gene3D - 31 129 IPR036388 -
Trre2g03001 347 MobiDBLite consensus disorder prediction 318 347 - -
Trre2g03001 347 Pfam HSF-type DNA-binding 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03001 347 PRINTS Heat shock factor (HSF) domain signature 39 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03001 347 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03001 347 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre2g03001 347 FunFam Heat shock transcription factor 1 32 129 - -
Trre2g03001 347 Coils Coil 213 233 - -
Trre2g03001 347 ProSitePatterns HSF-type DNA-binding domain signature. 78 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g03001 Trre-Chr2 26501861 26503693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g03001 21 313 HSF AT3G22830 45.906 1.53e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre2g03001 HSF_DNA-bind 1.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g03001 K09419 - gmx:100811945 393.275