Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02999 ATGTTCCCTGCACTTATGTCCAATTCCACTTCTTTCTCTAAAGAAACCACTCTCTCTTCTAATACACTTGGTAGATTAAACCACGTAGTTTCAACCATAAATTCTTCACAACAACCTCAAAAGACCAAGAAAAAAAGAAACCTCCCTGGTCACCCCGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAATCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTAAAGCAAAGAAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAACCTTCATGTGTTCATCATAACCCTTCAAGAGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATTCTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGATTTATGCTGTTCACTCTGATTGGAAAGCTCACTCCAAAACTTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCATTTTTTCCAGGAAGGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAATACCCAATTATCCACCACAAACCCACTAGCTCAATCTCTCTTCCTTTTCCCAAATCAACAAAGCCAAATCACATGGGACCCACCACAACAAAACCCTAACCCTAATACTCTTACATCATCCCTACTACACCACAACATGATCAAGCCTGAATCACATCAAAACTTTCACAACAACAACCTCTCTTCTTCTCCTCTTCCCTCATTTCTTCATGATCACCCCAACAACCCTAATTATAAGACCAATATCATGATGACATCATCACCCTTCCATGTCAGCACACAACAGCCTTCCTCCACTTCTGCCACGTCACCACACCTCTCAGCAACTGCACTTCTCCAGAAAGCAGCCACCGTCGGAGCCACCACCATCACAGGTGGCCAACCCGTTCATCTGCCACGTCAGCTTAGCATGAGCGAGTTTGGATCGGTTGATCACTACATTAACAACATAAGAGGAGGCCGGAACCTTAAGAACGACGATCTTACGAGGGATTTTCTCGGCCTTACTAACGGTGGAGGAAATGGTGGTTCTATCGACGTGAAGGATATGCTAACATTCACAGGAGGTGTAGAGTATCACGGCCACCAACCTCGCGAAAACATGATGATGTTCAAGCAGTCACAACAAGGTTTTGGTTTTCTTGGGACAACGGCAACTGTTCCCGAGTCGTGGGGGAATTGTTAG 1314 0.4254 MFPALMSNSTSFSKETTLSSNTLGRLNHVVSTINSSQQPQKTKKKRNLPGHPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTIFSRKDSFITHRAFCDALAEESARMSANTQLSTTNPLAQSLFLFPNQQSQITWDPPQQNPNPNTLTSSLLHHNMIKPESHQNFHNNNLSSSPLPSFLHDHPNNPNYKTNIMMTSSPFHVSTQQPSSTSATSPHLSATALLQKAATVGATTITGGQPVHLPRQLSMSEFGSVDHYINNIRGGRNLKNDDLTRDFLGLTNGGGNGGSIDVKDMLTFTGGVEYHGHQPRENMMMFKQSQQGFGFLGTTATVPESWGNC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02999 437 MobiDBLite consensus disorder prediction 32 55 - -
Trre2g02999 437 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Trre2g02999 437 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Trre2g02999 437 FunFam protein indeterminate-domain 12-like 51 120 - -
Trre2g02999 437 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Trre2g02999 437 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 32 400 IPR031140 -
Trre2g02999 437 SMART c2h2final6 72 94 IPR013087 -
Trre2g02999 437 SMART c2h2final6 149 169 IPR013087 -
Trre2g02999 437 SMART c2h2final6 114 144 IPR013087 -
Trre2g02999 437 Gene3D Classic Zinc Finger 126 207 - -
Trre2g02999 437 Gene3D Classic Zinc Finger 52 121 - -
Trre2g02999 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Trre2g02999 437 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02999 Trre-Chr2 26475855 26479443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02999 26 425 IDZ Gene Family AT4G02670 48.463 6.02e-125 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02999 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02999 K25870 - gmx:100812496 534.643