Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02972 ATGTCGAATCATCCTTCCGATACTCCCGCCGACGATTTCCTCGAACAAATTCTCGGCCTTCCGAATTTCACCTCCGCCGACGGTACCGACACTTCTTCCTTAGCAGCTCCGATGATGCTGCAGCTCAACTCCGGCGACGCAGCCACTCACCTTGGAGCCGGAGGTGGATTTCATGCGCCGGTTTACCATTTGGGACTGAGCTTGGACCAAGGCAAAGGAGGGTTCTTGAAACCAGATGATGCTTCCGGGAGTGGGAAACGTTTCCGGGAGGATGTTGTTGATACCAGACCTAAGAATACTTTTCATGGGCAACCAATGCCTACTACAGTTCCTGCTGCTCCACATCCACCAGCAATGCGTCCTAGAGTCCGTGCAAGAAGAGGTCAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCCGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACAGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCGCCACTGGTCACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTAGGGGCTGCAATGCAGTTTCTTCAATCAAAGGCTCTTTGCATCATGCCTATCTCACTGGCATCAGCAATATACCAATCGCAACCATCAGACAACTCCAGTATAGTTAAGCCGGAAGCTACTCCTCCTCCATAG 858 0.4977 MSNHPSDTPADDFLEQILGLPNFTSADGTDTSSLAAPMMLQLNSGDAATHLGAGGGFHAPVYHLGLSLDQGKGGFLKPDDASGSGKRFREDVVDTRPKNTFHGQPMPTTVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPEATPPP 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02972 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 188 IPR036638 GO:0046983
Trre2g02972 285 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Trre2g02972 285 SMART finulus 135 184 IPR011598 GO:0046983
Trre2g02972 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 264 - -
Trre2g02972 285 MobiDBLite consensus disorder prediction 96 133 - -
Trre2g02972 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Trre2g02972 285 FunFam Basic helix-loop-helix transcription factor 124 186 - -
Trre2g02972 285 Gene3D - 124 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02972 Trre-Chr2 26227650 26230794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02972 57 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 79.149 1.84e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g02972 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02972 - - gmx:100797789 435.261