Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02961 ATGGAAAATTCATTGGTGAACCATGATGAAACTGAGCTGAATCTTAAGGCAACAGAATTAAGGTTGGGATTACCCGGCTGTGATGAGATAAAGAAACTTCCATGCAATTTCTCTCTTCTTAGAAGCAACAAGAGATCTTCATCAGAAATTAGTGAGGTTGATTCCATGAGCAAGACCAAATTGAATGCTTCTAATGGTTCTGAAATCACAAGTGATGATCAAGACAATGCTCCACCTTCAAAGACACAAATAGTGGGATGGCCACCAATTAGATCTTATAGGAAGAATAACTTGCAACAGAAGAAAGGTGAATCAGAAGTTGGGATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTAAGGAAAATAGATCTCAAATTTTACAAGAGTTACTCAGAACTTCTCAAGGTTTTGGAAAATATGTTCAAGTGTACATTTGGTGAATATTCAGAAAGAGAAGGTTACAATGGATCTGAATTTGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTTATTGGAGATGTTCCTTGGGAAATGTTCAGTTCTTCTTGCAAGAGGTTGAGAATTATGAAAGGATCAGAAGCAAAAGGATTGGGTTGTTTTTGA 615 0.3691 MENSLVNHDETELNLKATELRLGLPGCDEIKKLPCNFSLLRSNKRSSSEISEVDSMSKTKLNASNGSEITSDDQDNAPPSKTQIVGWPPIRSYRKNNLQQKKGESEVGMYVKVSMAGAPYLRKIDLKFYKSYSELLKVLENMFKCTFGEYSEREGYNGSEFVPTYEDKDGDWMLIGDVPWEMFSSSCKRLRIMKGSEAKGLGCF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02961 204 FunFam Auxin-responsive protein 103 204 - -
Trre2g02961 204 Gene3D - 103 204 - -
Trre2g02961 204 MobiDBLite consensus disorder prediction 48 81 - -
Trre2g02961 204 ProSiteProfiles PB1 domain profile. 108 195 IPR000270 GO:0005515
Trre2g02961 204 SUPERFAMILY CAD & PB1 domains 105 194 - -
Trre2g02961 204 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 199 IPR003311 GO:0005634|GO:0006355
Trre2g02961 204 Pfam AUX/IAA family 41 202 IPR033389 -
Trre2g02961 204 MobiDBLite consensus disorder prediction 48 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02961 Trre-Chr2 26162317 26163697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02961 96 201 B3 DNA Binding Superfamily AT2G46530 33.962 2.67e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre2g02961 AUX_IAA 6.1e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02961 K14484 - gmx:100780752 300.056