Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02943 ATGGACGTTGTTGGAATAAGTTCTGAGGAGAAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTACATCTCGGCAACATTGAATTTTCAAAAGGAAAGGAAATGGACTCATCTATGCCCAAAGATGAAAAATCTCAGTTTCACCTACAGACTGCGGCTGAACTTTTCATGTGTGATGCAAAGGCACTAGAAGATTCTCTTCGCAAACGTGTAGTTGTTACTCGTGATGAAACTATTATTGTGTACTCAAGGTTGTTTCACTGGCTAGTAGATAAAATTAATAATTCAATTGGTCAGGATCCTGACTCAAAGTTTTTAATCGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTCTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAGAAAGAGGAGATTGATTGGAGTTACATTGAATTTGTTGACAATCAAGATATTTTGGATCTCATTGAAAAGATTGGTAAAACCAAAGTGTTTCTTAGAGCTGGTCAAATGGAAGAACTAGATACTTATAGAAGTGAGATCTTAGGAAAGTCAGCAAGCATTATTCAAAGGAAAGTTCGTTCCTATTTGGCCCGCCGAAGTTTTGTCTCGATTCGCTTGTCTGCTATACAGATACATTTTAAAAGCCACTGCCGGAAATACTTGGTCCAACATCATTTTAAAAACTTAAAGAAGGCAGCAATTGCCACCTAA 765 0.3673 MDVVGISSEEKEAIFRVVAAILHLGNIEFSKGKEMDSSMPKDEKSQFHLQTAAELFMCDAKALEDSLRKRVVVTRDETIIVYSRLFHWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKIGKTKVFLRAGQMEELDTYRSEILGKSASIIQRKVRSYLARRSFVSIRLSAIQIHFKSHCRKYLVQHHFKNLKKAAIAT 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02943 254 PRINTS Myosin heavy chain signature 106 134 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g02943 254 PRINTS Myosin heavy chain signature 159 187 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g02943 254 ProSiteProfiles IQ motif profile. 201 228 IPR000048 GO:0005515
Trre2g02943 254 Pfam Myosin head (motor domain) 81 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g02943 254 Pfam Myosin head (motor domain) 1 80 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g02943 254 Gene3D Myosin VI head, motor domain, U50 subdomain 81 122 - -
Trre2g02943 254 Gene3D Myosin VI head, motor domain, U50 subdomain 5 80 - -
Trre2g02943 254 Pfam IQ calmodulin-binding motif 201 219 IPR000048 GO:0005515
Trre2g02943 254 SMART MYSc_2a 1 250 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g02943 254 PANTHER MYOSIN 176 250 - -
Trre2g02943 254 Gene3D - 123 246 - -
Trre2g02943 254 ProSiteProfiles Myosin motor domain profile. 1 254 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre2g02943 254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02943 Trre-Chr2 25969470 25972083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02943 175 253 Myosins gene family AT1G04160 58.228 1.67e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02943 K10357 - gmx:100819463 319.701