Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02940 ATGGCGGATGTTGAACCCGAGGTAGCAGCAGCAGGAGTGCCAAAGAAGAGAACATTCAAGAAGTTCAGTTTCCGTGGTGTTGATCTCGATGCTCTCTTGGATATGAAAACTGATGAGCTTGTCAAGCTTTTCTCTGCTCGTGCCCGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCGAAACGTGACGCACCACCAGGTGAGAAGCCAGAACCAGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAATGGAAAGACCTTCAATCAGGTTGAAATTAAACCTGAAATGATTGGTCACTATCTTGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCACGGTAGGCCTGGTATTGGTGCTACTCACTCCTCCAGCTCAGCTGTTTCTTATCCAGACAACCGCAACATTGCAAACCTTGCTTTTCCTACGCCTCATTGTTTTAATCCTTTCAACTGTATTCTCTGCGCATACCAGACACCTTTGAGTCTCTGA 558 0.4695 MADVEPEVAAAGVPKKRTFKKFSFRGVDLDALLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSSSAVSYPDNRNIANLAFPTPHCFNPFNCILCAYQTPLSL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02940 185 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Trre2g02940 185 NCBIfam 30S ribosomal protein S19 19 147 IPR005713 GO:0003735|GO:0006412|GO:0015935
Trre2g02940 185 Gene3D 30s Ribosomal Protein S19; Chain A 9 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 FunFam 40S ribosomal protein S15 9 151 - -
Trre2g02940 185 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 147 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre2g02940 185 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02940 Trre-Chr2 25949436 25951650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02940 1 146 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.671 6.11e-90 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02940 K02958 - tpra:123918140 282.722