Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02935 ATGGCTCCAAAATCTTCCACTGCTTCACATCCTACTTACGAAGAGATGATTAAAGAAGCAATTGTGACATTGAAAGAGAAAACAGGTTCAAGTCAAATTGCGATTGCGAAATTCATCGAAGAGAAACACAAAAATCTGTCTCCAAATTTCAAGAAGCTATTACTTCAAGCTTTGAAGAAAAACGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAAGTTCATTCAAACTTTCTCCGGCGATTAAAGCTTCTGAGCCGAAGACAAAGCCGGCGGTTGCGAAGCCGAAGACAAAGCCAGCTGCTAAAGTGACGGCGGTGAAGGCCAAGCCAGCCGCTAAGCCAAAGACGAAAGCTGTAACAAAAGTTGTTTCAAAGCCCAAGCCTGCTGCTGCCAAGCCCAAAACTGCTGCTGCCAAGCCCAAAACTGCTGTTGCCAAGCCCAAAACTGCCGCTGCTAAGCCCAAAGCTGCTGCTCCTAAAGCTGTTGCTGCCAAGCCTAAGCCCAAGGCAGGTGCGAAACCGGCTAAGGCCTCAAGGACTTCGACGAGGACAACACCGGGGAAGAAAGTTGCTGCTTCGAAGGCAGTGGTGAAGAAAGCGGTGGCTGCTAAGAAATCTCCGGTGAAGAGTAAAACTGTGAAGTCTCCGGCGAAGAAAGTTTCGACGAAGCGAGGTGGAAGAAAATGA 684 0.4766 MAPKSSTASHPTYEEMIKEAIVTLKEKTGSSQIAIAKFIEEKHKNLSPNFKKLLLQALKKNVASGKLVKVKSSFKLSPAIKASEPKTKPAVAKPKTKPAAKVTAVKAKPAAKPKTKAVTKVVSKPKPAAAKPKTAAAKPKTAVAKPKTAAAKPKAAAPKAVAAKPKPKAGAKPAKASRTSTRTTPGKKVAASKAVVKKAVAAKKSPVKSKTVKSPAKKVSTKRGGRK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02935 227 PANTHER HISTONE H1 4 210 - -
Trre2g02935 227 PRINTS Histone H5 signature 23 40 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02935 227 PRINTS Histone H5 signature 157 176 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02935 227 PRINTS Histone H5 signature 135 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02935 227 PRINTS Histone H5 signature 102 116 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02935 227 MobiDBLite consensus disorder prediction 79 227 - -
Trre2g02935 227 Pfam linker histone H1 and H5 family 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02935 227 CDD H15 7 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02935 227 Gene3D - 4 101 IPR036388 -
Trre2g02935 227 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 9 78 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02935 227 SUPERFAMILY "Winged helix" DNA-binding domain 6 88 IPR036390 -
Trre2g02935 227 SMART h15plus2 7 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02935 Trre-Chr2 25899277 25900084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02935 1 76 Single Myb Histone (SMH) Gene Family AT1G72740 32.895 3.98e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02935 K11275 - cpap:110814810 110.538