Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02934 ATGGCCACAGAAGAACCCATTGTCGTTGTGGAACCTGTTCCCGAACCAACCATCACCGAACCACCAGCCTCGGAGAAAGAAGAACCTAAGCCCGAAGCAGAGAAGAAGACGAAGGAATCCAAACCTAAGAAAGCTTCCAAACCACGAAGCCCTGCTTCTCATCCTTCTTACGAAGAGATGATTAAGGATGCAATTGTGAGTCTGAAGGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAACTTCCTTCAAATTTCAAGAAGCTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTTCGAAGACGAAATCATCACCGGTGACTACACCTTCTGAGGCGAAGAAAAAGCCTGCAGCGGCCAAGCCGAAGACAAAGCCAACTGCTGTGAAGGCTAAGCCAGCCTCTAAGCCAAAGGCTAAAGCTGTTGTTAAGCCAAAGGCTTCTTCGAAGGCCAAAACTGGTGCTGTCAAACTCAAAACTACTGCTGCCAAGTCCAAAGTTGCTGTAAAGCCCAAGGCAGGTGTGAAAGCGAAGCCAAAGGAGAAGTCTGCTAAGGTTGCAAGGACATCGACGAGGACTTCGCCGGGGAAGAAAGTCGCTACTGTGAAGGCAGCACCTAAGAAGGTTGTGGCTGCGAAGAAAGCTCCGGTGAAGAGCGTGAAGCCTAAAAGCGTGAAGTCTCCGGCGAAGAATGTTTCGGTGAAGAGAGGGGGAAGGAAATGA 789 0.4766 MATEEPIVVVEPVPEPTITEPPASEKEEPKPEAEKKTKESKPKKASKPRSPASHPSYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSKTKSSPVTTPSEAKKKPAAAKPKTKPTAVKAKPASKPKAKAVVKPKASSKAKTGAVKLKTTAAKSKVAVKPKAGVKAKPKEKSAKVARTSTRTSPGKKVATVKAAPKKVVAAKKAPVKSVKPKSVKSPAKNVSVKRGGRK 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02934 262 CDD H15 51 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02934 262 PANTHER HISTONE H1 21 229 - -
Trre2g02934 262 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02934 262 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02934 262 MobiDBLite consensus disorder prediction 116 262 - -
Trre2g02934 262 Gene3D - 49 127 IPR036388 -
Trre2g02934 262 MobiDBLite consensus disorder prediction 1 58 - -
Trre2g02934 262 MobiDBLite consensus disorder prediction 21 46 - -
Trre2g02934 262 MobiDBLite consensus disorder prediction 119 133 - -
Trre2g02934 262 SUPERFAMILY "Winged helix" DNA-binding domain 48 126 IPR036390 -
Trre2g02934 262 Pfam linker histone H1 and H5 family 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02934 262 FunFam Histone H1 48 133 - -
Trre2g02934 262 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02934 262 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02934 262 PRINTS Histone H5 signature 137 151 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02934 262 PRINTS Histone H5 signature 169 186 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02934 262 PRINTS Histone H5 signature 191 210 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02934 Trre-Chr2 25894422 25895317 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02934 55 120 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 2.22e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02934 K11275 - cit:102626409 146.362