Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02933 ATGGCCACAGAAGAACCCATTGTCGTTGTGGAACCTGTTCCCGAACCAACCATCACCGAACCACCAGCCTCGGAGAAAGAAGAACCTAAGCCCGAAGCAGAGAAGAAGACGAAGGAATCCAAACCTAAGAAAGCTTCCAAACCACGAAGCCCTGCTTCTCATCCTTCTTACGAAGAGATGATTAAGGATGCAATTGTGAGTCTGAAGGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAACTTCCTTCAAATTTCAAGAAGCTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTTCGAAGACGAAATCATCACCGGTGACTACACCTTCTGAGGCGAAGAAAAAGCCTGCAGCGGCCAAGCCGAAGACAAAGCCAACTGCTGTGAAGGCTAAGCCAGCCTCTAAGCCAAAGGCTAAAGCTGTTGTTAAGCCAAAGGTTGTTTCAAAGGCCAAATCTGTTACGGCGAAACCCAAACCTGCCGCTGTAAAGCCCAAAGTTGGTGCTGCAAAGCCCAAGCCTGCTGCCAAGACCAAGACTGCTGTGAAACCCAAGGCCAATGAGAAATCAGCAAAGGTTGCAAGGACATCGACGAGGACTTCACCAGGGAAGAAAGTTACTGCTGCAAAGCCAGCACCTAAGAAAGTCGCGGCGGCAAAGAAAGCTCCGGTGAAGAGTGTGAAGCCTAAAAGCGTAAAGTCTCCGGCGAAGAAGGTTTCAACGAAGAGAGGAGGGAGGAAATGA 810 0.4753 MATEEPIVVVEPVPEPTITEPPASEKEEPKPEAEKKTKESKPKKASKPRSPASHPSYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLSSKTKSSPVTTPSEAKKKPAAAKPKTKPTAVKAKPASKPKAKAVVKPKVVSKAKSVTAKPKPAAVKPKVGAAKPKPAAKTKTAVKPKANEKSAKVARTSTRTSPGKKVTAAKPAPKKVAAAKKAPVKSVKPKSVKSPAKKVSTKRGGRK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02933 269 CDD H15 51 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02933 269 PRINTS Histone H5 signature 176 193 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02933 269 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02933 269 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02933 269 PRINTS Histone H5 signature 137 151 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02933 269 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Trre2g02933 269 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02933 269 MobiDBLite consensus disorder prediction 114 269 - -
Trre2g02933 269 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02933 269 MobiDBLite consensus disorder prediction 253 269 - -
Trre2g02933 269 FunFam Histone H1 48 133 - -
Trre2g02933 269 MobiDBLite consensus disorder prediction 1 58 - -
Trre2g02933 269 Pfam linker histone H1 and H5 family 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre2g02933 269 MobiDBLite consensus disorder prediction 21 46 - -
Trre2g02933 269 Gene3D - 49 127 IPR036388 -
Trre2g02933 269 MobiDBLite consensus disorder prediction 119 133 - -
Trre2g02933 269 PANTHER HISTONE H1 21 247 - -
Trre2g02933 269 SUPERFAMILY "Winged helix" DNA-binding domain 50 127 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02933 Trre-Chr2 25880804 25881720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02933 55 120 Single Myb Histone (SMH) Gene Family AT1G72740 33.333 3.56e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02933 K11275 - zju:107425932 143.665