Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02897 ATGGAAGGAAACTATCTGAATAGAAACACAATAACTACTCATAGAGATCATGATCATCATCTTCATCATCATCACAACTTGGGATTTGAGGAGCATACATGGGGAACATCATGGCCAGCAAGAAACTATACTTGTAGTTTTTGCAAAAGAGAGTTTAGGTCAGCTCAAGCTTTAGGTGGACATATGAATGTTCATAGAAGAGATAGGGCAAGATTAAGATCATCATTAATATCTTCTTTGGTTAATTCTGATCATCAATGCCCTAATAATAATATTAATAAACCTAACCCTACTACCATTACTACACAATCTCCTTTATCTAATGATGATGAGATTTTCAATTGTTCACACCCTTATCTCACTTTATCTTCTTCTTCTTCTTCACCAACCTTGGCTAATACTAGCCATGATGATAAGAAACCAAGACTCACACCTTCTTTATCTCTTCCCCTTTTGAATCCTCAAAGAAGTCAAATTATGAAGAGCTATGAAGATGTGAAGAAACATAATGTTTTGATGAATAGTGAGCAAAACATTACATTGGAGTTAGGAATAGGGTTACTTGAACACCAAGAGGAAAAGTTAGATTTGGAGCTTCGACTCTAG 606 0.3515 MEGNYLNRNTITTHRDHDHHLHHHHNLGFEEHTWGTSWPARNYTCSFCKREFRSAQALGGHMNVHRRDRARLRSSLISSLVNSDHQCPNNNINKPNPTTITTQSPLSNDDEIFNCSHPYLTLSSSSSSPTLANTSHDDKKPRLTPSLSLPLLNPQRSQIMKSYEDVKKHNVLMNSEQNITLELGIGLLEHQEEKLDLELRL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02897 201 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trre2g02897 201 Gene3D Classic Zinc Finger 30 97 - -
Trre2g02897 201 PANTHER OS07G0101800 PROTEIN 28 201 - -
Trre2g02897 201 SMART c2h2final6 43 65 IPR013087 -
Trre2g02897 201 MobiDBLite consensus disorder prediction 122 150 - -
Trre2g02897 201 SUPERFAMILY beta-beta-alpha zinc fingers 40 69 IPR036236 -
Trre2g02897 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Trre2g02897 201 Pfam C2H2-type zinc finger 43 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02897 Trre-Chr2 25459117 25459722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02897 8 201 C2H2 Transcription Factor Family AT3G23130 38.350 1.69e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02897 - - tpra:123890230 265.388