Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02896 ATGGAATTCAGCTACCTCCAAGAAGATTCAAAGAGCTCGAGCGACGAAAACATTGATCGATCGTCCGATCAAAACAACGACGACGATCATGACCGCGACATGGGAATTGGTAGATCCTATGAGTGTGTATTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCAAATAATAACAAAAGTGTCACCAAAACTAATTATGCTCCTCCTCCTCCTAGTTCAAGCAAATTAGTAGTTGATCATCATGATCATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTGCAAGAGGGGGTTATTATTCATCAATTTCATCCACAACTAATATTCCTCCTGAGGATGTTTGGACAAGATTGGAGTGGTTTGAGTTTGTATACAAATCCATTAAGTAA 429 0.38 MEFSYLQEDSKSSSDENIDRSSDQNNDDDHDRDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTNYAPPPPSSSKLVVDHHDHLGFYSTINPSHLARGGYYSSISSTTNIPPEDVWTRLEWFEFVYKSIK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02896 142 Pfam C2H2-type zinc finger 40 64 - -
Trre2g02896 142 MobiDBLite consensus disorder prediction 1 33 - -
Trre2g02896 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Trre2g02896 142 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Trre2g02896 142 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Trre2g02896 142 MobiDBLite consensus disorder prediction 60 86 - -
Trre2g02896 142 Gene3D Classic Zinc Finger 30 87 - -
Trre2g02896 142 MobiDBLite consensus disorder prediction 12 33 - -
Trre2g02896 142 PANTHER OS07G0101800 PROTEIN 19 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02896 Trre-Chr2 25438733 25439244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02896 25 127 C2H2 Transcription Factor Family AT3G23130 35.714 1.48e-14 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02896 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02896 - - gmx:102670484 118.242