Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02893 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATAAGAGGTTGTGTTTTTGCACCTTATTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAACTTCTTGCTCATCTCCCTGTAAGTGATCGTTGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGTTGTGTTTCCCATATTTTTTCCCTCCAACAACAGGTTGTCAATTTACAAACACAACTAGCTTATCTCAAAGAACAAGCATCACAAACTTGTGTCAACAATGCATCAACCAATGAAAACCCTAATGAAAAATCTACTACTCTTACTCCTCCCCAAGATCTTCAAAGTTTGTTCCATGTGGAAAATTCCAATAATCACCAACTTGGGCAAGAATTTCATACTAATAACTTGTCTAATATTTCCTCAACAACACAATATTATGTTAACAACAATAATCACATGGATCTAAACCCTATGAGGAATTATGAAAATTCAAGAGGAGTCATGGAAGAAAACAGTTCATTTTCTAGCTTTGAGGAGAGTACTTCTAATTCCATGTCCTATGACATGCAAACAAATAGGAGGACATGGGGTTTTGATGAAGTTGAAGACTTACATTCAGTGGCTTTTGGATACAGTTGA 717 0.371 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVVNLQTQLAYLKEQASQTCVNNASTNENPNEKSTTLTPPQDLQSLFHVENSNNHQLGQEFHTNNLSNISSTTQYYVNNNNHMDLNPMRNYENSRGVMEENSSFSSFEESTSNSMSYDMQTNRRTWGFDEVEDLHSVAFGYS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02893 238 Coils Coil 91 111 - -
Trre2g02893 238 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Trre2g02893 238 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Trre2g02893 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02893 Trre-Chr2 25404452 25405446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02893 11 237 AS2 family AT3G58190 51.515 4.39e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre2g02893 LOB 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02893 K13945 - gmx:100776678 321.627