Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02866 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATATCAAGCTCTCCCACCTATCATAACTCAAACTAGTACACTTCATCACCACCCTCCACAGCCTGTTTCAGACTATGCTTTTCCAATATTTGCCATTGTTGTTCTCAGCATCATGGCTACCATTTTGTTGCTCCTTAGCTACTTCACTTTTTTAACCAAATGCTGTTCAAACTGGAATCAAGTTAACCCAATGAGATGGACTTCGGTACTTCGAGCTCGACAGAACGAGGAAGATCACTTCATAGCATTGTCTCCTACGGTGTGGCACCGAGGACTAGACGAAGCAGTCATTCGAGAAATCCCCAGTTTTCAGTTTATAAAAGAAGAATGTGAGGATCAAAGTGTGTATGGCTGTGTTGTTTGTTTGACAGAGTTTCAAGAACAAGATGTGATAAAAATTCTCCCTAAGTGTAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATACAACAACAAACACTTCATTTGACATTATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCAAACTTAGGTAATGATGAAGATTTTGTGGTCATTGAATTAGGTGGAAGAGAAAATGAGGTTCAACAAGAAATAAATTATTCAAGAGGAAGCATAGTACATAGTAGAAATTATCACTCTACAAGGAAAATGAAACCTATTAAGTGTCACGATATTTCCATCATGGGAGATGAGTGCATTGATATCATCAGAAAGACAGATGACACGTTTTCGATTCAGCCGATTCGAAGATCTTTCTCAATGGATTCTGCAAATGACAGACAAGTTTTTATGGATGTTCAAGCCATTATACAACAAAATAGAAACAACCAGAATGATGCTAGTGCAAGTGAGGATTGTAATAGCAGAACTAAAAGAGCATTCTTTCCATTTTGTTATGGAAAGGAATCCAAAAATGCATTCTTTCCCTTAGGTGAATGA 1023 0.3783 MAMNKNQFYKLGYQALPPIITQTSTLHHHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPMRWTSVLRARQNEEDHFIALSPTVWHRGLDEAVIREIPSFQFIKEECEDQSVYGCVVCLTEFQEQDVIKILPKCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTTNTSFDIIIAPSSSPQDSQLLSNLGNDEDFVVIELGGRENEVQQEINYSRGSIVHSRNYHSTRKMKPIKCHDISIMGDECIDIIRKTDDTFSIQPIRRSFSMDSANDRQVFMDVQAIIQQNRNNQNDASASEDCNSRTKRAFFPFCYGKESKNAFFPLGE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02866 340 CDD RING-H2_EL5-like 130 172 - -
Trre2g02866 340 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Trre2g02866 340 SMART ring_2 130 171 IPR001841 -
Trre2g02866 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 177 IPR013083 -
Trre2g02866 340 PANTHER RING-H2 FINGER PROTEIN ATL16 18 338 IPR044600 GO:0016567|GO:0016740
Trre2g02866 340 SUPERFAMILY RING/U-box 129 177 - -
Trre2g02866 340 Pfam Ring finger domain 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02866 Trre-Chr2 25110592 25111614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02866 30 305 C3H Transcription Factor Family AT1G04360 41.479 2.80e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02866 K19041 - gmx:100809883 475.707