Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02860 ATGGCTATGATGAGTAACACTTTCTTCTATAACTCAGATTTAGAAATGTTGCAACAAGATCCTACTAATATTCTCTTTGAATCATTTCATCATGACCCTTTTCATGATTCACTTTCTTTTAACATGGTTGACCAACAAGGACAAACCAAAAATGAATCAAATCAATTAGTGAAGAATATTTCTGAAGTAAAAGAAGAAAAATCATCATACATAGGTGTGAGAAAAAGACCTTGGGGGAAATATGCTGCAGAAATCAGAGACACAACAAGAGGAGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTTCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGTAGAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAAACACTATGAACAGAGAAAATTGTCATCAAAATCTACAAAGAATAATAAAGCAGAGAAGTTACAAGAATCAGCAGAGGGATCATCATCAAGTGTGTTGGTGTTACAAGATTTGGGAGTTGAATATCTTGAGCAACTTTTAAGTATATCAGATCATGAAAGTACCAGCACCAGCAATTATTTCTAA 648 0.3441 MAMMSNTFFYNSDLEMLQQDPTNILFESFHHDPFHDSLSFNMVDQQGQTKNESNQLVKNISEVKEEKSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFSVQRVKESLQEIQYDCRKGSSPALALKEKHYEQRKLSSKSTKNNKAEKLQESAEGSSSSVLVLQDLGVEYLEQLLSISDHESTSTSNYF 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02860 215 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Trre2g02860 215 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Trre2g02860 215 MobiDBLite consensus disorder prediction 158 178 - -
Trre2g02860 215 SUPERFAMILY DNA-binding domain 68 128 IPR016177 GO:0003677
Trre2g02860 215 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Trre2g02860 215 Gene3D AP2/ERF domain 69 129 IPR036955 GO:0003700|GO:0006355
Trre2g02860 215 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Trre2g02860 215 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Trre2g02860 215 MobiDBLite consensus disorder prediction 158 175 - -
Trre2g02860 215 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Trre2g02860 215 PANTHER DNA-BINDING DOMAIN 50 205 IPR044808 GO:0003700|GO:0009873
Trre2g02860 215 FunFam Ethylene-responsive transcription factor 2 68 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02860 Trre-Chr2 25009514 25010161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02860 45 209 AP2-EREBP Transcription Factor Family AT3G23240 52.941 7.97e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02860 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02860 K14516 - gmx:100812017 231.876