Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02858 ATGAGTCTCTCTTTTTTCCACAACTCAGATATGGAAATGCTGCAAGATCCTTCATATATTTCATTCGAATCCTTTGGTACTTACGATTATCTTTCCTTCGATATGGCCGATTTATCATCGAACTCACAGACACTGCCAAAAAACCAGACAAAACTATCAATGTTGAAGTCAACATGTGAAACTAAAGAAGTATTGCAGAAGAATAAGATGGAAAAGTCATCATCATATATAGGTGTAAGAAAAAGACCTTGGGGAAAATATGCTGCAGAGATCAGAGACACAACAAGAGGAGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTCCTGTTCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATAAATGTAGAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTATGAACAGAGAAAATTGTCATCAAAATCTACAAAGAACAATAAAGCAGAGAAGTTACAAGAATCAGCAGAGGGATCATCATCAAGTGTGTTGGTGTTAGAAGATTTGGGAGCTGAATATCTTGAGCAACTTCTAAGTATGTCAGATAATCAAAGTACAAGTTCAAGCAATTTCTAA 663 0.3635 MSLSFFHNSDMEMLQDPSYISFESFGTYDYLSFDMADLSSNSQTLPKNQTKLSMLKSTCETKEVLQKNKMEKSSSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFPVQRVKESLQEIQYKCRKGSSPALALKERHYEQRKLSSKSTKNNKAEKLQESAEGSSSSVLVLEDLGAEYLEQLLSMSDNQSTSSSNF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02858 220 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Trre2g02858 220 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Trre2g02858 220 SUPERFAMILY DNA-binding domain 74 134 IPR016177 GO:0003677
Trre2g02858 220 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Trre2g02858 220 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Trre2g02858 220 FunFam Ethylene-responsive transcription factor 2 74 135 - -
Trre2g02858 220 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Trre2g02858 220 PANTHER DNA-BINDING DOMAIN 51 212 IPR044808 GO:0003700|GO:0009873
Trre2g02858 220 MobiDBLite consensus disorder prediction 164 181 - -
Trre2g02858 220 MobiDBLite consensus disorder prediction 164 191 - -
Trre2g02858 220 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Trre2g02858 220 CDD AP2 74 135 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02858 Trre-Chr2 24981387 24982049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02858 75 215 AP2-EREBP Transcription Factor Family AT3G23240 55.862 3.79e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02858 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02858 K14516 - gmx:100527364 221.861