Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02857 ATGGAAATGTTGCAAGACCCATCAGAAATTTCCTTCGAATCATTTAATTTTCACGATTCTCTTTCCTTCGATATGGTCGATTCCTCATCGAGTTCACAGACACAGGTGTCTTTGAACTCGATGAAGCCATCTGAAGCAAAAGAAGTATTGCTGAATAATAATAAGATGGAAAAGTCACCATCATATATAGGTGTAAGAAAAAGACCTTGGGGGAAATATGCTGCAGAAATCAGAGACACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTTCTCAATTTTCCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGTAGAAAAGGATCTTCACCTGCACTTGCACTCAAAGAGAAACACTATGAACAGAGAAAATTGTCATCAAAATCTACAAAGAATAATAAATCACAGAAACAAGAATCAGCAGAGGGATCATCATCATCATCATCAAGTGTGTTGGTGTTACAAGATTTGGGAGCTGAATATCTTGAGGAACTTCTTGCCATATCTGATAATCAAACTACAAGCAGTAACAGCTATTTCAATTCAACTTGTTAA 642 0.3645 MEMLQDPSEISFESFNFHDSLSFDMVDSSSSSQTQVSLNSMKPSEAKEVLLNNNKMEKSPSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFPVQRVKESLQEIQYDCRKGSSPALALKEKHYEQRKLSSKSTKNNKSQKQESAEGSSSSSSSVLVLQDLGAEYLEELLAISDNQTTSSNSYFNSTC 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02857 213 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Trre2g02857 213 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Trre2g02857 213 PANTHER DNA-BINDING DOMAIN 40 201 IPR044808 GO:0003700|GO:0009873
Trre2g02857 213 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Trre2g02857 213 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Trre2g02857 213 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Trre2g02857 213 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Trre2g02857 213 MobiDBLite consensus disorder prediction 148 176 - -
Trre2g02857 213 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Trre2g02857 213 Pfam AP2 domain 60 111 IPR001471 GO:0003700|GO:0006355
Trre2g02857 213 MobiDBLite consensus disorder prediction 158 176 - -
Trre2g02857 213 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02857 Trre-Chr2 24979336 24979977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02857 61 203 AP2-EREBP Transcription Factor Family AT3G23240 57.343 4.81e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02857 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02857 K14516 - gmx:100812017 189.504