Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02856 ATGAATCACTCTTTTTTTCACAACCCAGATATGGAAATGTTGCAAGACCCATCAGAAATTTCCTTCGAATCATTTAACTTTCACGATTCTCTTTCCTTCGATATGGTCGATTCCTCATCGAGTTCGCAGACACCAGTGTCTCTGAACTCGATGAAGCCATCTGAAGTTAATGAAGTATTGCAGAATAATAATAAGATGGATCAGAAGTCATATATAGGAGTAAGAAAAAGACCTTGGGGAAAATATGCTGCAGAAATCAGAGACACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTTCTCAATTTTCCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGTAGAAAAGGATCTTCACCTGCACTTGCACTCAAAGAGAAACACTATGAACAGAGAAAATTGTCATCAAAATCTACAAAGAATAATAAAGCAGAGAAGTTACAAGAATCATCAGAGGGATCATCATCAAGTGTGTTGGTGTTAGAAGATTTGGGAGCTGAATATCTTGAGCAACTTCTAAGTATGTCTGATACTAATAGTCAAAGTACAAGCACCAGCAGCTACTTCAAATAA 660 0.3682 MNHSFFHNPDMEMLQDPSEISFESFNFHDSLSFDMVDSSSSSQTPVSLNSMKPSEVNEVLQNNNKMDQKSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFPVQRVKESLQEIQYDCRKGSSPALALKEKHYEQRKLSSKSTKNNKAEKLQESSEGSSSSVLVLEDLGAEYLEQLLSMSDTNSQSTSTSSYFK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02856 219 FunFam Ethylene-responsive transcription factor 2 69 130 - -
Trre2g02856 219 CDD AP2 69 130 IPR001471 GO:0003700|GO:0006355
Trre2g02856 219 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Trre2g02856 219 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Trre2g02856 219 PANTHER DNA-BINDING DOMAIN 44 209 IPR044808 GO:0003700|GO:0009873
Trre2g02856 219 MobiDBLite consensus disorder prediction 42 63 - -
Trre2g02856 219 ProSiteProfiles AP2/ERF domain profile. 70 128 IPR001471 GO:0003700|GO:0006355
Trre2g02856 219 MobiDBLite consensus disorder prediction 158 176 - -
Trre2g02856 219 Gene3D AP2/ERF domain 69 130 IPR036955 GO:0003700|GO:0006355
Trre2g02856 219 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Trre2g02856 219 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Trre2g02856 219 SMART rav1_2 70 134 IPR001471 GO:0003700|GO:0006355
Trre2g02856 219 MobiDBLite consensus disorder prediction 158 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02856 Trre-Chr2 24958923 24959582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02856 68 206 AP2-EREBP Transcription Factor Family AT3G23240 57.343 1.81e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02856 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02856 K14516 - gmx:100527364 205.682