Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02855 ATGGAGGGAAATAGATCAATTTCAAACTCAGCAAATGGAAATGCAGATCAAATAAAGTATAGAGGAATTCGTAGGAGACCATGGGGAAAATTTGCAGCTGAGATTCGTGATCCAACAAGAAAAGGAACAAGAATATGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTTAATTTCCCTAATGAATATCAAGCTCCTAATTCATCTTCTTCTTCTTCTTCTTCATTACCTATGCCTCTTACAATGCCTCCTCCTAATCTTAATCCTAATCCTTCTTCTTCTTCTTCTTCTTCCTATTCTGTTGATGACATTAATTTTGAGTTTGAATTCTTCGATAATAAGTTGCTTCAAGAACTCCTTCAAGATGGAACACACAATAATTAG 435 0.3609 MEGNRSISNSANGNADQIKYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEEAARAYDAAAFHFRGHRAILNFPNEYQAPNSSSSSSSSLPMPLTMPPPNLNPNPSSSSSSSYSVDDINFEFEFFDNKLLQELLQDGTHNN 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02855 144 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Trre2g02855 144 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Trre2g02855 144 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Trre2g02855 144 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Trre2g02855 144 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Trre2g02855 144 Pfam AP2 domain 19 70 IPR001471 GO:0003700|GO:0006355
Trre2g02855 144 MobiDBLite consensus disorder prediction 78 115 - -
Trre2g02855 144 PANTHER DNA-BINDING DOMAIN 14 120 IPR044808 GO:0003700|GO:0009873
Trre2g02855 144 MobiDBLite consensus disorder prediction 78 94 - -
Trre2g02855 144 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Trre2g02855 144 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Trre2g02855 144 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02855 Trre-Chr2 24938597 24939031 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02855 1 137 AP2-EREBP Transcription Factor Family AT3G23230 51.095 1.35e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02855 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02855 - - cam:101502737 164.081