Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02852 ATGGATTTTGTTGATTCTTCATTTTTTCAATTCCAATACCAAAACCTTAACACTTCTTTTTCAGAATCATCATGGGATGATTTCTTTTTCTTCAATGAAGACAACAATAACAATAGCAACACTTTTCCAATGAACTTCACTGATCAAAACACACAAGAAGTTTCATTATCCAATTCCAATTCAAACTCCAACACTTCAAACTCTCAAATAAGTTCAGAATCACAAGAAGTTTCATCCAATAATTCATCAACTCAAGTTATAATAGAAACACAATCATCATCATCATCACCTAAGAGGCCGTACAGAGGAGTTAGAAGAAGACCATGGGGAAAATTCGCGGCGGAAATAAGAGATTCAACTAGAAATGGTGTTAGGGTTTGGATTGGAACATTTGATACAGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTATCAACAAGAGGTTCAATGGCAGTGTTGAATTTTCCTGAACAAGTTGTGAGGGAATCATTGAAAGATATGGTGATTAATAAGTCTTGGGAAAATGATGGTTCTTCACCTGTTTTAGCACTTAAGAGGAAACATACTTTGAAAAGAAAATCTAAGGCAAGTAATTCCAAAAAGACCAAAAGGGTAGAAAGGGAAATGGACAATAATGTTGTTTCACAAAATGTGTTGGTTTTGGAAGATTTGGGTTCTGATTATTTAGACCAACTTCTTAGTTTGAGTACTTCTTCTCAAGTCTTTTGTTAA 738 0.3442 MDFVDSSFFQFQYQNLNTSFSESSWDDFFFFNEDNNNNSNTFPMNFTDQNTQEVSLSNSNSNSNTSNSQISSESQEVSSNNSSTQVIIETQSSSSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEQVVRESLKDMVINKSWENDGSSPVLALKRKHTLKRKSKASNSKKTKRVEREMDNNVVSQNVLVLEDLGSDYLDQLLSLSTSSQVFC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02852 245 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Trre2g02852 245 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Trre2g02852 245 MobiDBLite consensus disorder prediction 190 210 - -
Trre2g02852 245 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Trre2g02852 245 MobiDBLite consensus disorder prediction 52 106 - -
Trre2g02852 245 PANTHER DNA-BINDING DOMAIN 60 237 IPR044808 GO:0003700|GO:0009873
Trre2g02852 245 CDD AP2 101 160 IPR001471 GO:0003700|GO:0006355
Trre2g02852 245 MobiDBLite consensus disorder prediction 52 99 - -
Trre2g02852 245 FunFam Ethylene-responsive transcription factor 2 99 159 - -
Trre2g02852 245 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
Trre2g02852 245 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Trre2g02852 245 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Trre2g02852 245 Pfam AP2 domain 101 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02852 Trre-Chr2 24881224 24881961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02852 70 241 AP2-EREBP Transcription Factor Family AT3G23240 53.757 2.50e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g02852 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02852 K14516 - gmx:100784784 216.468