Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02850 ATGCCCTTCCCATGTTGGTTGATTCAATTTCCCTTTTCTGGGTGCTCTGAAGTTAAGTTTGGAGAAACCCTTAAGGTTGACCCAAATGAATTTGAGGCATGCATTCATCTTTCACAGGCTGCATTAGGTGAATCAAAGAAAGACAAAGGAAATGATTCTGTAGTTCTTTTTGTGAAAGTTGGTGAACAGAAGCTAGTTTTGGGAACCCTTCTTAAGGACAAAATCCCTCAGATATCTCTTGAATTGGTTTTGGACAAGGAGTTTGAGCTTTCTCATAATTCCAAAACTGCTAGTGTCCATTTATCCTGCACTAGCGAGGATGATTATATTGATAGTGATGAGGAGGAGATCCCCTTGGCTGTTGCAGAGAATGCTGATTCACAAAGCGAAGCTCAGTCACGAAAAAATAGTCAACGTTCAAAGCAGTCACGAACTCACGATTACCGTTTCAGTTGCCATTTGAAGCCTTCAATCCCCGTTTCACTCGCCGTTTCAGTTCGTATCAACTAG 510 0.4157 MPFPCWLIQFPFSGCSEVKFGETLKVDPNEFEACIHLSQAALGESKKDKGNDSVVLFVKVGEQKLVLGTLLKDKIPQISLELVLDKEFELSHNSKTASVHLSCTSEDDYIDSDEEEIPLAVAENADSQSEAQSRKNSQRSKQSRTHDYRFSCHLKPSIPVSLAVSVRIN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02850 169 FunFam Histone deacetylase HDT1 11 108 - -
Trre2g02850 169 Pfam Nucleoplasmin-like domain 17 102 IPR041232 -
Trre2g02850 169 Gene3D Nucleoplasmin core domain 12 109 - -
Trre2g02850 169 MobiDBLite consensus disorder prediction 122 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02850 Trre-Chr2 24841903 24846811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02850 17 101 C2H2 Transcription Factor Family AT3G44750 54.118 1.90e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02850 - - gmx:100795506 144.05