LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g02846	ATGGGCTCTCTTCCTAAAGAAGCATCATATTCTCCAACCTCTCACCATATTAGCTTGTTGCAACAAGTTATCGATGATAGTGACATACAAAATTGCTTAGTTCGAAGTTACAAGAGGAGTTTCAATGGTTTTGCCGTTATACTCAATGATCAACAAAGGATAAAACTTTCCGGCATGAGAGGTGTGATCTCAGTTTTTCCAAGTCAAGAGTACCACCTAAAAACCACAAGGTCGTGGGACTTCGTTGGTTTACCTCAATCAGCCAAACGGAGCAAAACTAATGAAAGTGATTTGGTGATCGGAGTCATAGATAGTGGAATTTGGCCAGAATCTGAAAGTTTCAACGATATAGGTCTTGGTGCTATTCCAAAAAAGTGGAAAGGAGTTTGTGCAGGCGGACGTAACTTCAATTGTAACAAAAAGATTGTTGGAGCACGATTTTACGGTTTTAATGATGAGAGTGCAAGAGACTTAGAAGGTCATGGAACTCACACAGCGTCAACAGCTGGTGGAAGCAATGTGAAGGGTGCGAGCTTTAATGGTCTTGCAAAAGGAACTGCAAGAGGTGGAGTCCCATACTCAAGGATTGCTACATACAAAGTTTGCAACGATCAAGGACAATGCGATGGTCATGCTCTCTTATCTGCATTTGATGATGCCATTGCAGATGGAGTTGATGTCATTACCATATCTCTGGGTAGACCAGACATGATTGATTTTTTGAATGAACCTATTTCCATCGGTTCATTTCATGCCATGGAGAAGGGAATACTCACAGTGCAGGCTGCCGGAAACGATGGTCCTAGCCTAAGTACTGTTTCCAGTTTTGCACCTTGGTTATTCACTGTTGCTGCAACTACTATGGATCGTCAATTCATTGATAAGCTCATTCTTGGAAATGGAAAGACGTTTATTGGTACGTCAATTAATATTTTCCCTTCAAATGGAACTAAATTTCCAATTGCCGTGCGTAATGCTCATGCTTGCTCTGCTGGAGGAAATGCATCCCCTGAAAAGTGTGATTGTATAGACAAAAATATGGTCAAGGGTAAACTTGTTTTATGCGGAGCACCCGGAGGTGAAAATTTCGCTTATGTCAATGGTGCAATTGGTTCGATCATTAATAGTACTAATATAGCTTCTATCACCGATAAGCCTTCACTTAACTTGGAAACAAAGGACTTTGTTCATGTTCAATCTTATACAAATTCCACCAAATATCCTGTAGCTGCAATTTTGAAGAGTGAGAGCTTCCATGACGCCAATGCTCCTAGAATTGCCTCTTTCTCTTCTCGTGGCCCAAATACCTTAGTTCTAGAAATTATGAAACCAGATGTAAGTGCCCCAGGAGTCAATATTTTAGCTGCATATCCACCTCAAAAATTATACTCAGATGTTATAGCGAAATACGCCCTATTATCTGGAACCTCTATGGCATGTCCTCACGTTGCTGGAGTTGTTGCATATGTGAAATCATTTCATCCAGATTGGTCACCTGCAGCTATCAAATCTGCCATCATGACCACCGCAAAACCGGTGAAAGGTACTTATGATGATTTGGCAGGTGAGTTTGCTTATGGTTCTGGGAATATCAATCCACAACAAGCCATTCACCCGGGACTTGTTTATGACATCTCTAAGGAAGATTATGTACAAATGCTTTGTAATTATGGGTATGATACTAACAAAATTAAACAAATTAGTGGAGATAACTCAAGTTGCGATGGACCTTCCAAAAGAGCCCTGGTGAAAGATATAAATTATCCGGCAATGGTGTTTCCTGTTAGGCCTTATCACAAGCGTTTCCATGTCAAGATTCATAGGACAGTCACAAATGTTGGTTTTCCAAACTCAACCTACAAGGCTACTCTCATCCATCATAATCCAAAAATCAAGATTAAGGTGGAACCAAAACTGCTCTCATTTAAATCATTAAATGAGAAACAATCATTTGTTGTCACCGTTGTTGGAGGGGCAAAATTAAATGAAACTGTGTATTCCTCATCACTTGTATGGTCTGATGGTACCCACAATGTCAAGAGTCCCATCATTGTGCAAATACTTCTTTCAATATAA	2076	0.4013	MGSLPKEASYSPTSHHISLLQQVIDDSDIQNCLVRSYKRSFNGFAVILNDQQRIKLSGMRGVISVFPSQEYHLKTTRSWDFVGLPQSAKRSKTNESDLVIGVIDSGIWPESESFNDIGLGAIPKKWKGVCAGGRNFNCNKKIVGARFYGFNDESARDLEGHGTHTASTAGGSNVKGASFNGLAKGTARGGVPYSRIATYKVCNDQGQCDGHALLSAFDDAIADGVDVITISLGRPDMIDFLNEPISIGSFHAMEKGILTVQAAGNDGPSLSTVSSFAPWLFTVAATTMDRQFIDKLILGNGKTFIGTSINIFPSNGTKFPIAVRNAHACSAGGNASPEKCDCIDKNMVKGKLVLCGAPGGENFAYVNGAIGSIINSTNIASITDKPSLNLETKDFVHVQSYTNSTKYPVAAILKSESFHDANAPRIASFSSRGPNTLVLEIMKPDVSAPGVNILAAYPPQKLYSDVIAKYALLSGTSMACPHVAGVVAYVKSFHPDWSPAAIKSAIMTTAKPVKGTYDDLAGEFAYGSGNINPQQAIHPGLVYDISKEDYVQMLCNYGYDTNKIKQISGDNSSCDGPSKRALVKDINYPAMVFPVRPYHKRFHVKIHRTVTNVGFPNSTYKATLIHHNPKIKIKVEPKLLSFKSLNEKQSFVVTVVGGAKLNETVYSSSLVWSDGTHNVKSPIIVQILLSI	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g02846	691	ProSiteProfiles	Serine proteases, subtilase domain profile.	78	537	-	-
	Trre2g02846	691	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	1	74	IPR037045	-
	Trre2g02846	691	Pfam	Fibronectin type-III domain	585	685	IPR041469	-
	Trre2g02846	691	SUPERFAMILY	Subtilisin-like	18	619	IPR036852	GO:0004252\|GO:0006508
	Trre2g02846	691	Gene3D	-	289	419	-	-
	Trre2g02846	691	Gene3D	-	554	688	-	-
	Trre2g02846	691	CDD	Peptidases_S8_3	71	510	IPR034197	-
	Trre2g02846	691	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	28	685	IPR045051	-
	Trre2g02846	691	Pfam	Subtilase family	96	527	IPR000209	GO:0006508\|GO:0008236
	Trre2g02846	691	PRINTS	Subtilisin serine protease family (S8) signature	95	114	IPR015500	-
	Trre2g02846	691	PRINTS	Subtilisin serine protease family (S8) signature	474	490	IPR015500	-
	Trre2g02846	691	PRINTS	Subtilisin serine protease family (S8) signature	157	170	IPR015500	-
	Trre2g02846	691	FunFam	Subtilisin-like protease SBT1.5	97	298	-	-
	Trre2g02846	691	CDD	PA_subtilisin_like	296	412	-	-
	Trre2g02846	691	ProSitePatterns	Serine proteases, subtilase family, serine active site.	475	485	IPR023828	-
	Trre2g02846	691	Gene3D	Peptidase S8/S53 domain	97	550	IPR036852	GO:0004252\|GO:0006508
	Trre2g02846	691	Pfam	Peptidase inhibitor I9	9	73	IPR010259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g02846	Trre-Chr2	24762968	24766204	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g02846	1	685	Subtilisin-like Serine Gene Family	AT5G59120	51.868	0.0	706

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g02846	-		-	psat:127076787	848.58