Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02842 ATGCCTTCGCTACTCTCTCCTGGTAAAATCCACAAACTCCAGATCGAGAATTTCAAATCCTACAAGGGTTTCCAAGATATCGGTCCTTTCTATGATTTCACCGCAATTATCGGCCCTAATGGTTCCGGCAAGTCCAACCTTATGGACGCTATTAGTTTCGTTCTCGGTGTTAGAACCGGCCAACTCCGTGGTGCTCAACTCAAAGATCTCATCTATGCATTCGATGATAGAGATAAAGAACAAAAAGGAAGAAGAGCTTTTGTTCGTTTGATTTATCGTCTCGCTAATGATTCTGAGATTAAATTTACTAGAACTATTACTTCTGCTGGAGCAAGTGAGTATCGTATTGATGATAGTGTTGTTACTTGGGATGTTTATAATGCTAAACTCAAATCGTTAGGGATTCTTGTTAAGGCTCGAAATTTCTTGGTCTTTCAGGGTGATGTGGAATCTATTGCGTCGAAGAATCCGAAGGAGCTTACTGGACTTATTGAGCAGATATCTGGATCTGATGAGCTTAAGAGAGATTATGAGCAGTTTGAAGAAGAAAAAGCTACTGCTGAGGAGAAATCGGCACTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTTCGACTGCAAGATCAATTGAAATCTATGAAGAAGGAACATTTCTTGTGGCAGTTGTACAATATAGAAAATGATATTGTTAAAACAACCGAGGAACTTGAAGCTGATAAAAGAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAATTATGAACATGAAGCCAGTAAAAAGAAGAAAGAACAAGCCAAATATCTGAAAGAAGTTATGCTACGTGAGAAGAAAATAACTGAGAAAAACAACAAACTTGACAAGACCCAACCTGAGCTTCTTAAGTTAAAGGAGGAAATGTCTCGTATTAGTGCAAAAATTAAAAAAGGTAAGAAGGAGCTTAGCAAAAAAAGGGAAGAACAAAGGAGGCATGCCGATGATATAGCAGGCCTAAAGAGTGGTATTCAGGATCTTACAGCGAAGATGGCAGACCTACAGGAGAAGGGTCGAAATGTTGGTGATGAGCTCAATTTAGATGGCAATGACTTGGAAGAATATTTTAGAATAAAAGAAGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAGCATGCTGATACTGAAGCTCAAAATAATTTGGATGAAAATCTTCAACAATTAAAAAACCGGGAGGCTGAGCTGGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATAAAGGATAATAATCAAAAGGATAAGGAAACCGTTGAAAACTTGAATAAAGAACTGCGTGAGATGAAAGAAAAACATAATGAATCCAAGAGAAAATATGATAACTTGAAGATAAAAATCGGCGAAGTAGAAAATGATCTCCGTGAGTTGAAGGCTGATAGATATGAAAATGAAAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGCTTGTTTCAAGGAGTCCATGGCCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTCGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAAAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGTGTGAAGCAAATAATGGAAAGGTTACGCTCATTAGGGGGTACAGCAAAACTGTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTCGAGGAAGCCAAAATTTTAAGCTGGAGTGGGGAGAGATTTAAAGTTGTAACTGTGGATGGAATTTTGCTGACGAAGTCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGATCTAAACAGTGGGATGACAAGAAATTTGAAGCATGTCTTAAGAAGAAAGAGCAGTATGAATCAGAGTTGGAGCAGCTAGGATCAATAAGGGATATGCACCTTAAAGAATCTGAAACAGCGGGGAAAAAGAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGGGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGGGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGAAGAAGTTAAGAGATGCTGTTGAAAAGAGGAATAAAGAATTACGTACTCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAGAATTCAGCAAGTCAGTTGGGGTAGCAAACATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCTGAGGAGAGGCTGAATCTGAGTAGCCAACTTGCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCAAGAATTGGAATCTTCTGTAACTGCTTTAGAGGATGATTTAAAACGTGTACAGAGCAAAGAGGGTGAAGCAAAGTTAGCAGCAGAGAAAGCTGCTGAGGAGATCAATCAATTGAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGATGATTGTGAAAAGGAAATCCATGAATGGAAGAAGAGGGCTTCTACATCCACAACAATCTTATCCAAACTTAATCGTGGGATAAACTCAAAGGAGACACATATTGAGCAGTTGATGGGGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAACAGATTATCCTTCCAATCATATCAGATCCCATGGATACTGATAGCTCAACACCGGGTCCAGTTTTTGACTTTGATAAGCTTAGTAGGACACTAAAAGATAAACACTCTGACAGGGATAAAATAGAGGTAGAATTTAAGACCAAAATGGATGCATTGATATCTGAGATCGAAAGAACGGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTTTGCTTGAAAAAGAAAGAGCTGTGACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGCAGGAAAAAGCAAAAAGATTCAATGATGTAAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAATCATATAGCTGGTAATATTGATAAAATTTACAAACAACTTACAAAGAGCAACACCCATCCTCTGGGTGGAACAGCATACTTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGTGACATGGAACAACTATCTGGTGGTGAAAAGACTGTTGCTGCGCTTGCGTTGCTATTCTCCATCCATAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGCTTTATTCGATCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGACGCTGATGGTGGATGTGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAATCTTTAATTGGGGTTCTTAGGGACTCGGATAGAGGCTGTTCGGGTACTCTCACATTTGATCTGACTAAATACAGGGAGTCCTAA 3639 0.3913 MPSLLSPGKIHKLQIENFKSYKGFQDIGPFYDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRAFVRLIYRLANDSEIKFTRTITSAGASEYRIDDSVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHLRLQDQLKSMKKEHFLWQLYNIENDIVKTTEELEADKRSREGVIEELENYEHEASKKKKEQAKYLKEVMLREKKITEKNNKLDKTQPELLKLKEEMSRISAKIKKGKKELSKKREEQRRHADDIAGLKSGIQDLTAKMADLQEKGRNVGDELNLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADTEAQNNLDENLQQLKNREAELDSQEKQMRERLEKIKDNNQKDKETVENLNKELREMKEKHNESKRKYDNLKIKIGEVENDLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLCKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFEACLKKKEQYESELEQLGSIRDMHLKESETAGKKSGLEKKIQYAEIEKGSIEDKLSNFSLEKGTIKEEIKRISPELKKLRDAVEKRNKELRTLEKRINEITDRIYKEFSKSVGVANIREYEENRLKDAQNVAEERLNLSSQLAKLKYQLEYEQNRDMSSRIQELESSVTALEDDLKRVQSKEGEAKLAAEKAAEEINQLKDEAKEWKSKSDDCEKEIHEWKKRASTSTTILSKLNRGINSKETHIEQLMGQKQEILEKCELEQIILPIISDPMDTDSSTPGPVFDFDKLSRTLKDKHSDRDKIEVEFKTKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEQEKAKRFNDVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGCGFQSIVISLKDSFYDKAESLIGVLRDSDRGCSGTLTFDLTKYRES 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02842 1212 Coils Coil 1002 1022 - -
Trre2g02842 1212 Coils Coil 342 369 - -
Trre2g02842 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 1194 IPR027417 -
Trre2g02842 1212 Coils Coil 825 894 - -
Trre2g02842 1212 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Trre2g02842 1212 Coils Coil 747 774 - -
Trre2g02842 1212 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Trre2g02842 1212 Coils Coil 412 495 - -
Trre2g02842 1212 Gene3D - 8 207 IPR027417 -
Trre2g02842 1212 Gene3D - 944 1211 IPR027417 -
Trre2g02842 1212 Coils Coil 170 231 - -
Trre2g02842 1212 PIRSF SMC 8 1204 IPR024704 GO:0005524|GO:0016887
Trre2g02842 1212 Gene3D - 495 577 - -
Trre2g02842 1212 Coils Coil 251 285 - -
Trre2g02842 1212 SMART SMC_hinge_2 517 629 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre2g02842 1212 Pfam RecF/RecN/SMC N terminal domain 10 1192 IPR003395 -
Trre2g02842 1212 SUPERFAMILY Smc hinge domain 481 674 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre2g02842 1212 Coils Coil 307 334 - -
Trre2g02842 1212 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1212 - -
Trre2g02842 1212 Pfam SMC proteins Flexible Hinge Domain 517 628 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre2g02842 1212 Gene3D - 578 656 - -
Trre2g02842 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 274 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02842 Trre-Chr2 24742116 24754946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02842 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 2.03e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02842 K06636 - gmx:100791953 1927.52