Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02841 ATGCCTTCGCTACTCTCTCCTGGTAAAATCCACAAACTCCAGATCGAGAATTTCAAATCCTACAAGGGTTTCCAAGATATCGGTCCTTTCTATGATTTCACCGCAATTATCGGCCCTAATGGTTCCGGCAAGTCCAACCTTATGGACGCTATTAGTTTCGTTCTCGGTGTTAGAACCGGCCAACTCCGTGGTGCTCAACTCAAAGATCTCATCTATGCATTCGATGATAGAGATAAAGAACAAAAAGGAAGAAGAGCTTTTGTTCGTTTGATTTATCGTCTCGCTAATGATTCTGAGATTAAATTTACTAGAACTATTACTTCTGCTGGAGCAAGTGAGTATCGTATTGATGATAGTGTTGTTACTTGGGATGTTTATAATGCTAAACTCAAATCGTTAGGGATTCTTGTTAAGGCTCGAAATTTCTTGGTCTTTCAGGGTGATGTGGAATCTATTGCGTCGAAGAATCCGAAGGAGCTTACTGGACTTATTGAGCAGATATCTGGATCTGATGAGCTTAAGAGAGATTATGAGCAGTTTGAAGAAGAAAAAGCTACTGCTGAGGAGAAATCGGCACTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTTCGACTGCAAGATCAATTGAAATCTATGAAGAAGGAACATTTCTTGTGGCAGTTGTACAATATAGAAAATGATATTGTTAAAACAACCGAGGAACTTGAAGCTGATAAAAGAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAATTATGAACATGAAGCCAGTAAAAAGAAGAAAGAACAAGCCAAATATCTGAAAGAAGTTATGCTACGTGAGAAGAAAATAACTGAGAAAAACAACAAACTTGACAAGACCCAACCTGAGCTTCTTAAGTTAAAGGAGGAAATGTCTCGTATTAGTGCAAAAATTAAAAAAGGTAAGAAGGAGCTTAGCAAAAAAAGGGAAGAACAAAGGAGGCATGCCGATGATATAGCAGGCCTAAAGAGTGGTATTCAGGATCTTACAGCGAAGATGGCAGACCTACAGGAGAAGGGTCGAAATGTTGGTGATGAGCTCAATTTAGATGGCAATGACTTGGAAGAATATTTTAGAATAAAAGAAGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAGCATGCTGATACTGAAGCTCAAAATAATTTGGATGAAAATCTTCAACAATTAAAAAACCGGGAGGCTGAGCTGGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATAAAGGATAATAATCAAAAGGATAAGGAAACCGTTGAAAACTTGAATAAAGAACTGCGTGAGATGAAAGAAAAACATAATGAATCCAAGAGAAAATATGATAACTTGAAGATAAAAATCGGCGAAGTAGAAAATGATCTCCGTGAGTTGAAGGCTGATAGATATGAAAATGAAAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGCTTGTTTCAAGGAGTCCATGGCCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTCGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAAAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGTGTGAAGCAAATAATGGAAAGGTTACGCTCATTAGGGGGTACAGCAAAACTGGTTTTTGATTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTCGAGGAAGCCAAAATTTTAAGCTGGAGTGGGGAGAGATTTAAAGTTGTAACTGTGGATGGAATTTTGCTGACGAAGTCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGATCTAAACAGTGGGATGACAAGAAATTTGAAGCATGTCTTAAGAAGAAAGAGCAGTATGAATCAGAGTTGGAGCAGCTAGGATCAATAAGGGATATGCACCTTAAAGAATCTGAAACAGCGGGGAAAAAGAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGGGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGGGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGAAGAAGTTAAGAGATGCTGTTGAAAAGAGGAATAAAGAATTACGTACTCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAGAATTCAGCAAGTCAGTTGGGGTAGCAAACATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCTGAGGAGAGGCTGAATCTGAGTAGCCAACTTGCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCAAGAATTGGAATCTTCTGTAACTGCTTTAGAGGATGATTTAAAACGTGTACAGAGCAAAGAGGGTGAAGCAAAGTTAGCAGCAGAGAAAGCTGCTGAGGAGATCAATCAATTGAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGATGATTGTGAAAAGGAAATCCATGAATGGAAGAAGAGGGCTTCTACATCCACAACAATCTTATCCAAACTTAATCGTGGGATAAACTCAAAGGAGACACATATTGAGCAGTTGATGGGGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAACAGATTATCCTTCCAATCATATCAGATCCCATGGATACTGATAGCTCAACACCGGGTCCAGTTTTTGACTTTGATAAGCTTAGTAGGACACTAAAAGATAAACACTCTGACAGGGATAAAATAGAGGTAGAATTTAAGACCAAAATGGATGCATTGATATCTGAGATCGAAAGAACGGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTTTGCTTGAAAAAGAAAGAGCTGTGACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGCAGGAAAAAGCAAAAAGATTCAATGATGTAAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAATCATATAGCTGGTAATATTGATAAAATTTACAAACAACTTACAAAGAGCAACACCCATCCTCTGGGTGGAACAGCATACTTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGTGACATGGAACAACTATCTGGTGGTGAAAAGACTGTTGCTGCGCTTGCGTTGCTATTCTCCATCCATAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGCTTTATTCGATCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGACGCTGATGGTGGATGTGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAATCTTTAATTGGGGTTCTTAGGGACTCGGATAGAGGCTGTTCGGGTACTCTCACATTTGATCTGACTAAATACAGGGAGTCCTAA 3648 0.3909 MPSLLSPGKIHKLQIENFKSYKGFQDIGPFYDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRAFVRLIYRLANDSEIKFTRTITSAGASEYRIDDSVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHLRLQDQLKSMKKEHFLWQLYNIENDIVKTTEELEADKRSREGVIEELENYEHEASKKKKEQAKYLKEVMLREKKITEKNNKLDKTQPELLKLKEEMSRISAKIKKGKKELSKKREEQRRHADDIAGLKSGIQDLTAKMADLQEKGRNVGDELNLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADTEAQNNLDENLQQLKNREAELDSQEKQMRERLEKIKDNNQKDKETVENLNKELREMKEKHNESKRKYDNLKIKIGEVENDLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLVFDCKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFEACLKKKEQYESELEQLGSIRDMHLKESETAGKKSGLEKKIQYAEIEKGSIEDKLSNFSLEKGTIKEEIKRISPELKKLRDAVEKRNKELRTLEKRINEITDRIYKEFSKSVGVANIREYEENRLKDAQNVAEERLNLSSQLAKLKYQLEYEQNRDMSSRIQELESSVTALEDDLKRVQSKEGEAKLAAEKAAEEINQLKDEAKEWKSKSDDCEKEIHEWKKRASTSTTILSKLNRGINSKETHIEQLMGQKQEILEKCELEQIILPIISDPMDTDSSTPGPVFDFDKLSRTLKDKHSDRDKIEVEFKTKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEQEKAKRFNDVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGCGFQSIVISLKDSFYDKAESLIGVLRDSDRGCSGTLTFDLTKYRES 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02841 1215 Gene3D - 495 577 - -
Trre2g02841 1215 Coils Coil 342 369 - -
Trre2g02841 1215 Gene3D - 8 207 IPR027417 -
Trre2g02841 1215 Gene3D - 946 1214 IPR027417 -
Trre2g02841 1215 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Trre2g02841 1215 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Trre2g02841 1215 PIRSF SMC 8 1207 IPR024704 GO:0005524|GO:0016887
Trre2g02841 1215 Coils Coil 412 495 - -
Trre2g02841 1215 Coils Coil 828 897 - -
Trre2g02841 1215 Coils Coil 170 231 - -
Trre2g02841 1215 Coils Coil 750 777 - -
Trre2g02841 1215 Coils Coil 251 285 - -
Trre2g02841 1215 Pfam RecF/RecN/SMC N terminal domain 10 1195 IPR003395 -
Trre2g02841 1215 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre2g02841 1215 Coils Coil 307 334 - -
Trre2g02841 1215 Coils Coil 1005 1025 - -
Trre2g02841 1215 Gene3D - 578 659 - -
Trre2g02841 1215 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Trre2g02841 1215 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1215 - -
Trre2g02841 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 1197 IPR027417 -
Trre2g02841 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 275 IPR027417 -
Trre2g02841 1215 SUPERFAMILY Smc hinge domain 481 677 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02841 Trre-Chr2 24742116 24754946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02841 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 2.00e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02841 K06636 - gmx:100791953 1934.46