Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02832 ATGGTCGGTGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGATGTTATGGATTACAAAATTCCTTTACATGAAAATTTATGTAAAGTATGTGAAGAATTGGATATAGGAGTTAATGAAGCAAGAGATTTCATAGAAAAATGGGGTTCGAAGACGAGCAAGATTCACAGTGTTCTACAAAGTGGAACATTGTTGATCAAGTTACAGAACACGTCACTTGACATTTGTCACATGATAGTTAAATCCTTACAGTCACCTCTATCTGCATCAGTTTTGGCTAATCTCCAGCACTATATCCAAGAACTTCAATGTCTCAAGAAGGAAACGGCAATGGTCTATATAGAAAAGGCGCTGAGAAACCAAAGAGATAATATTGAACCTTGCAATGAGAATCTGAAGGAAATTATTGACTTACTTAGATTGACATCAACTCAGGAGCTCTTGAAAGAAACTATTGCTGTGGAAAAGGAAAGATTGAATGCAGAAGGACATAAAATGAAAGGGGACTTGGAAGAATTCAACGAAATTGTGAATCTTGTCCGCAACTTACGTGATTATGTTATGAAAACCGAGTGCTTTGCAGTCAAAAGTGGTGTCTCTTTCCCTCCGTACTTTCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATGTATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAACGACTTACTCATACAAATCTCGTTCCTAATTATACTGTCAAAGCTATGGTAGCAACTTGGTGTGAGGAAAATAACGCCAATCATTCAAGTAACACTGAGCACAATAGTTCATCCCATATAACAGTCCCCCCTGATCATTTATTGTCTCAAGAATTACGTAGTGCCACTTCAATTTCAAGATCATGTCTTCAAACTGGAAATGCATTTGAGGAACGAATTGGTGATAACCCTTTTAGATCAAATGGAGAATGCAATGGATGCCAGAATGTAGAAATAGAAAAGTGGGAGCTACAATCCCCAAATATTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTAGTGACTGTCCACTTGCAGTTTCAAAAGATGTATCAAGAATTTCCGATAAACGTCAAAATATGAAGGGTTCGCCCGTAGATGCAGAGGGGATGGAAATTGGAAAAAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTTACATCACATGTCAAACTTGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATCGAAGACCTCCAAAGCCAATCAATTGAAGTGCAAACTACTGCCGCAGAAGAATTGCGGCTCCTTACAAGGCATAACACGGAAAACCGTATCATTGTAGGGAAGTGTGGGGCTGTCACGCCTTTACTTTCGCTGCTATATTCAGATGGGAAAGTAACACAAGAGCATGCTGTGACAGCTCTTCTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAGGTGGGAGCTACAGAACCCCTTATCCATGTTTTGAAGACAGGAAATGACGGTGCCAAAGAAAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACAGTAAAGCAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGAACTTCTTGCCTCAGGAGCACTTAGAGGAAAGAAGGATGCAGCTACTGCTTTATACAGCCTATCAATATTTCACGAGAATAAAGCTCGAATAGTTCAAGCGGGAGCTGTGAAATTTCTGGTCCAGTTAACGGATCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCTAACCTGTCGACAATTGCGGAAGGCAGGTTAGAAATTGCAAGAGAAGGTGGCATCCCTTCATTAGTTGAAATTGTTGAATCGGGTTCTCAGAGCGGAAAGGAAAATGCTGCCTCCATTCTCTTACAATTATGCCTTCATAGTTCCAAGTTTTGTACACTTGTTTTACAAGAAGGAGCTGTACCTCCTCTGGTTGCATTATCTCAATCTGGTACACCAAGGGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGTGAAGGGAAAATCATGA 2142 0.4029 MVGVLKRLKPVLDDVMDYKIPLHENLCKVCEELDIGVNEARDFIEKWGSKTSKIHSVLQSGTLLIKLQNTSLDICHMIVKSLQSPLSASVLANLQHYIQELQCLKKETAMVYIEKALRNQRDNIEPCNENLKEIIDLLRLTSTQELLKETIAVEKERLNAEGHKMKGDLEEFNEIVNLVRNLRDYVMKTECFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQCIQKWLDHGLTVCPKTRQRLTHTNLVPNYTVKAMVATWCEENNANHSSNTEHNSSSHITVPPDHLLSQELRSATSISRSCLQTGNAFEERIGDNPFRSNGECNGCQNVEIEKWELQSPNIHSRSESFSSSISSSDCPLAVSKDVSRISDKRQNMKGSPVDAEGMEIGKNNNSNTTNSHSRVDLHHMSNLGLNELTTSSHVNKLIEDLQSQSIEVQTTAAEELRLLTRHNTENRIIVGKCGAVTPLLSLLYSDGKVTQEHAVTALLNLSINEDNKALIMEVGATEPLIHVLKTGNDGAKENSAAALFSLSVMENSKAKIGRSGAVKALVELLASGALRGKKDAATALYSLSIFHENKARIVQAGAVKFLVQLTDPADGMVDKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQSGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATVKGKS 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02832 713 Gene3D - 366 502 IPR011989 -
Trre2g02832 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 275 IPR013083 -
Trre2g02832 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 510 IPR000225 GO:0005515
Trre2g02832 713 SMART arm_5 498 538 IPR000225 GO:0005515
Trre2g02832 713 SMART arm_5 580 619 IPR000225 GO:0005515
Trre2g02832 713 SMART arm_5 539 579 IPR000225 GO:0005515
Trre2g02832 713 SMART arm_5 457 497 IPR000225 GO:0005515
Trre2g02832 713 SMART arm_5 620 660 IPR000225 GO:0005515
Trre2g02832 713 Pfam U-box domain 201 271 IPR003613 GO:0004842|GO:0016567
Trre2g02832 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 632 IPR000225 GO:0005515
Trre2g02832 713 PANTHER U BOX DOMAIN-CONTAINING 5 701 - -
Trre2g02832 713 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Trre2g02832 713 Gene3D - 503 710 IPR011989 -
Trre2g02832 713 CDD RING-Ubox_PUB 201 253 IPR045210 -
Trre2g02832 713 FunFam RING-type E3 ubiquitin transferase 197 273 - -
Trre2g02832 713 FunFam RING-type E3 ubiquitin transferase 413 706 - -
Trre2g02832 713 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
Trre2g02832 713 SUPERFAMILY ARM repeat 419 700 IPR016024 -
Trre2g02832 713 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
Trre2g02832 713 MobiDBLite consensus disorder prediction 375 402 - -
Trre2g02832 713 Pfam Armadillo/beta-catenin-like repeat 457 496 IPR000225 GO:0005515
Trre2g02832 713 Pfam Armadillo/beta-catenin-like repeat 544 578 IPR000225 GO:0005515
Trre2g02832 713 Pfam Armadillo/beta-catenin-like repeat 498 537 IPR000225 GO:0005515
Trre2g02832 713 SUPERFAMILY RING/U-box 199 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02832 Trre-Chr2 24581589 24584409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02832 13 713 U-box Gene Family AT3G54790 52.011 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02832 - - mtr:25484253 1133.63