Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02831 ATGCCCTTCAAGAAGATCTGTAATAATATGGTCGGTGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGATGTTATGGATTACAAAATTCCTTTACATGAAAATTTATGTAAAGTATGTGAAGAATTGGATATAGGAGTTAATGAAGCAAGAGATTTCATAGAAAAATGGGGTTCGAAGACGAGCAAGATTCACAGTGTTCTACAAAGTGGAACATTGTTGATCAAGTTACAGAACACGTCACTTGACATTTGTCACATGATAGTTAAATCCTTACAGTCACCTCTATCTGCATCAGTTTTGGCTAATCTCCAGCACTATATCCAAGAACTTCAATGTCTCAAGAAGGAAACGGCAATGGTCTATATAGAAAAGGCGCTGAGAAACCAAAGAGATAATATTGAACCTTGCAATGAGAATCTGAAGGAAATTATTGACTTACTTAGATTGACATCAACTCAGGAGCTCTTGAAAGAAACTATTGCTGTGGAAAAGGAAAGATTGAATGCAGAAGGACATAAAATGAAAGGGGACTTGGAAGAATTCAACGAAATTGTGAATCTTGTCCGCAACTTACGTGATTATGTTATGAAAACCGAGTGCTTTGCAGTCAAAAGTGGTGTCTCTTTCCCTCCGTACTTTCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATGTATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCAAAGACTCGTCAACGACTTACTCATACAAATCTCGTTCCTAATTATACTGTCAAAGCTATGGTAGCAACTTGGTGTGAGGAAAATAACGCCAATCATTCAAGTAACACTGAGCACAATAGTTCATCCCATATAACAGTCCCCCCTGATCATTTATTGTCTCAAGAATTACGTAGTGCCACTTCAATTTCAAGATCATGTCTTCAAACTGGAAATGCATTTGAGGAACGAATTGGTGATAACCCTTTTAGATCAAATGGAGAATGCAATGGATGCCAGAATGTAGAAATAGAAAAGTGGGAGCTACAATCCCCAAATATTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTAGTGACTGTCCACTTGCAGTTTCAAAAGATGTATCAAGAATTTCCGATAAACGTCAAAATATGAAGGGTTCGCCCGTAGATGCAGAGGGGATGGAAATTGGAAAAAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTTACATCACATGTCAAACTTGGGATTGAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATCGAAGACCTCCAAAGCCAATCAATTGAAGTGCAAACTACTGCCGCAGAAGAATTGCGGCTCCTTACAAGGCATAACACGGAAAACCGTATCATTGTAGGGAAGTGTGGGGCTGTCACGCCTTTACTTTCGCTGCTATATTCAGATGGGAAAGTAACACAAGAGCATGCTGTGACAGCTCTTCTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAGGTGGGAGCTACAGAACCCCTTATCCATGTTTTGAAGACAGGAAATGACGGTGCCAAAGAAAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACAGTAAAGCAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGAACTTCTTGCCTCAGGAGCACTTAGAGGAAAGAAGGATGCAGCTACTGCTTTATACAGCCTATCAATATTTCACGAGAATAAAGCTCGAATAGTTCAAGCGGGAGCTGTGAAATTTCTGGTCCAGTTAACGGATCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCTAACCTGTCGACAATTGCGGAAGGCAGGTTAGAAATTGCAAGAGAAGGTGGCATCCCTTCATTAGTTGAAATTGTTGAATCGGGTTCTCAGAGCGGAAAGGAAAATGCTGCCTCCATTCTCTTACAATTATGCCTTCATAGTTCCAAGTTTTGTACACTTGTTTTACAAGAAGGAGCTGTACCTCCTCTGGTTGCATTATCTCAATCTGGTACACCAAGGGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGTGAAGGGAAAATCATGA 2169 0.402 MPFKKICNNMVGVLKRLKPVLDDVMDYKIPLHENLCKVCEELDIGVNEARDFIEKWGSKTSKIHSVLQSGTLLIKLQNTSLDICHMIVKSLQSPLSASVLANLQHYIQELQCLKKETAMVYIEKALRNQRDNIEPCNENLKEIIDLLRLTSTQELLKETIAVEKERLNAEGHKMKGDLEEFNEIVNLVRNLRDYVMKTECFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQCIQKWLDHGLTVCPKTRQRLTHTNLVPNYTVKAMVATWCEENNANHSSNTEHNSSSHITVPPDHLLSQELRSATSISRSCLQTGNAFEERIGDNPFRSNGECNGCQNVEIEKWELQSPNIHSRSESFSSSISSSDCPLAVSKDVSRISDKRQNMKGSPVDAEGMEIGKNNNSNTTNSHSRVDLHHMSNLGLNELTTSSHVNKLIEDLQSQSIEVQTTAAEELRLLTRHNTENRIIVGKCGAVTPLLSLLYSDGKVTQEHAVTALLNLSINEDNKALIMEVGATEPLIHVLKTGNDGAKENSAAALFSLSVMENSKAKIGRSGAVKALVELLASGALRGKKDAATALYSLSIFHENKARIVQAGAVKFLVQLTDPADGMVDKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQSGKENAASILLQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATVKGKS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02831 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 477 519 IPR000225 GO:0005515
Trre2g02831 722 SUPERFAMILY ARM repeat 428 709 IPR016024 -
Trre2g02831 722 MobiDBLite consensus disorder prediction 384 411 - -
Trre2g02831 722 PANTHER U BOX DOMAIN-CONTAINING 4 710 - -
Trre2g02831 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Trre2g02831 722 Pfam U-box domain 210 280 IPR003613 GO:0004842|GO:0016567
Trre2g02831 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 284 IPR013083 -
Trre2g02831 722 SMART Ubox_2 212 275 IPR003613 GO:0004842|GO:0016567
Trre2g02831 722 Gene3D - 375 511 IPR011989 -
Trre2g02831 722 ProSiteProfiles U-box domain profile. 208 282 IPR003613 GO:0004842|GO:0016567
Trre2g02831 722 Pfam Armadillo/beta-catenin-like repeat 507 546 IPR000225 GO:0005515
Trre2g02831 722 Pfam Armadillo/beta-catenin-like repeat 466 505 IPR000225 GO:0005515
Trre2g02831 722 Pfam Armadillo/beta-catenin-like repeat 553 587 IPR000225 GO:0005515
Trre2g02831 722 SMART arm_5 507 547 IPR000225 GO:0005515
Trre2g02831 722 SMART arm_5 548 588 IPR000225 GO:0005515
Trre2g02831 722 SMART arm_5 589 628 IPR000225 GO:0005515
Trre2g02831 722 SMART arm_5 629 669 IPR000225 GO:0005515
Trre2g02831 722 SMART arm_5 466 506 IPR000225 GO:0005515
Trre2g02831 722 FunFam RING-type E3 ubiquitin transferase 208 282 - -
Trre2g02831 722 SUPERFAMILY RING/U-box 208 281 - -
Trre2g02831 722 FunFam RING-type E3 ubiquitin transferase 422 715 - -
Trre2g02831 722 Gene3D - 512 719 IPR011989 -
Trre2g02831 722 CDD RING-Ubox_PUB 210 262 IPR045210 -
Trre2g02831 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 641 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02831 Trre-Chr2 24581589 24584436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02831 2 722 U-box Gene Family AT3G54790 51.957 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02831 - - mtr:25484253 1152.5