Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02828 ATGGGTCTTAGAGATGTCGGTGCATCACTTCCACCTGGGTTTCGATTTTATCCAAGTGATGAAGAGTTGGTCCTTCATTACCTTTATAAAAAGATCACAAATGAGGACGTTCTTAAAGGTACCTTGGAGGAAATCGACTTGCATACATGCGAGCCTTGGCAACTTCCAGAGGTTGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCAACTGGCTTTCGAACCAATAGAGCTACGACATCTGGATATTGGAAAGCAACAGGGAAGGATCGAACGGTGTTTGATCCAATCAGTGGTGAGGTTGTAGGAATGAGGAAAACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAAACAGAAAATAGTGTCAAATTAAGCCCACAAGACATGTATGAAAATATAGCTCCATCTTTAACCAACCAAACTATGCCAATTGGTTATAACCAACTTGCTTCTTTCTCATCCTCAATGACAACCCATCATTGTCATCCAAATGAGAACCAAAATAATTCTTTGATGAATCTACTTCAATTTTCAATGGATGCAACCACCAATTGTAGTAGTGTAACTCAAATTAGTCCTAAATGTGATGATGGGTATGGATTTTTGTGGGACATGGATTTAGAAGATCATCATGATGGTGTCTCCTCATCGAACTTGGAAGGAATGAGATTCGAAGTTGATAATAATAATTGCATGGTCTTGCTATAA 831 0.3959 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPISGEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENSVKLSPQDMYENIAPSLTNQTMPIGYNQLASFSSSMTTHHCHPNENQNNSLMNLLQFSMDATTNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVSSSNLEGMRFEVDNNNCMVLL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02828 276 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Trre2g02828 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 211 - -
Trre2g02828 276 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Trre2g02828 276 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Trre2g02828 276 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02828 Trre-Chr2 24516259 24521076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02828 9 165 NAC Transcription Factor Family AT1G76420 58.125 1.83e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g02828 NAM 3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02828 - - gmx:100783645 446.047