Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02822 ATGGAAGAAGAACAGGATCGATTTTTGCTTACTACTTTAGGCGTTAAATCCGCCAATCCTGAAGACATCGAACGCCACGTTCTCCAAAAGGCTACTAGGAACGATTCAGTTACAGTTACTGAAGCTGAAAGGAACACTGATAAAAAAGAAGGTTCTACTTTACCTGAAAATGTTGATCCGTTATTTACTGCAAAAGCTGAACTTCATCAGAAGTTGAGAGCGATTGAATTTGAAATTGGTGCGGTTTCTTCGACTATTCAACGGCCGAGAGATGTTGATAAGGGTGAAGACAATGGTGATGTTGGTGAGGAGAATGAGAATGTGGAGGAAGGGATTGGTGAGGGTGCTGGTTCGGAGCTTCAGCGTGCTCTTGCTGCTGATAGGTTGAGAAGTTTAAAGAATACAAAGGCTCAATTGGAGAAAGAGCTTTCGAGGTTTTCTAAAGATGGTGATTCGAAAAGTACTGAGCGTAAAAAAGTTATCTTTAGTTTAGTTAAGGAGGATCGAAGACCAAAGAAGAAGCTTAAAGATGATAAGAAATTAAGTAAAAGACCTGCAAAGCGGTTTAAGACGGTTTCGTTTGATGATGATGCTGATTTTGATGCTGTTCTGGATGCAGCCTCTGCGGGATTTGTAGAAACCGAAAGGGATGAATTGGTCAGAAAAGGAATTTTTACTCCTTTTCATAAGTTGAAGGGCTTTGAGCGCGGCATTCAACAACCTCAAGCATCAACTAGTCGTAATGCAGCTGAGCAAGAAAATACCGACGATCGTGTTTTGCCCAGTGTTGAGAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGCCCAACCTCCAAGCTGCTTCAGCCTGAAGAGTTACCGAAGCTTGATGCACCCACTATTCCTTTTCGCAGGCTCAAAAAACCACTTCAATTACCCCAACCTATAGACAGTGGCGAGGATCTGAATACAGATTCAAAAAGGAAAAAAAGGCGTCCTTTGCCTGGTAGGAAATGGACCGAGCGTATTTCTTCTGAGGATAGACAACTGGAAGAAAGTGAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGTGCATGATGTTGAACTTTCTGAACATGAATCTTATGTAACATTAGAAGGTGGATTGAAAATCCCTAGTAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGTTGCACTGTCAAAAAACTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTATACAAGTATTATCATTTCTGGCTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGAGACAGTGGAAAAGGGAAGCCAAAAAGTGGTATCCTAAGTTCCATGTAGAACTTTTACATGATTCTGCTCAGGATCTGGCTTCTAAAAAGAAGCGAGCTGGATCCGATGGAACAGACTCTGAAAGCAATAGTTCAAGCGACAATGATTATGAGAGAAGTGTACCGTCTAAAAACACAAGAAAATGGGAAACCCTGATAAATCGTGTCATGAGATCACAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATATTGGGGGACCAGTTGCTTCACATTGATTGGGGATATGCTGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCAGAAGTTACACTAGCTTGCAAACAGCTACAAACTGTACACCGCGTCATAATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATTCAAATGCTTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTCATGCTGCGTGATTTAATTATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTAAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTGGATGGAGGCAGAAATTCGCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCAGACCTACTTGAAAGGGAACATGCCTTCAGCAATCCAGATTACGGAAATCCAGAACGTAGTGGGAAAATGAAAGTGGTAGCTCAAGTGCTTAATGTTTGGAAGGAGCAGGGCCACCGCGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATACTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCTTTAATGGATGAATTTAATGCCTCGATTGATATTTTTGTTTTCATTTTAACAACCAAAGTAGGGGGGTTGGGGACAAATCTTACCGGTGCTGATAGAGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGCGAATTGGTCAGAAACGGGATGTGACAATATATAGGTTAATCACTCGTGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGAGATATGAAGGACCTTTTTGTACTGAATGTGGATGGAGAAACTGGCTCAACAGAAACATCAAATATTTTCAGTCAAATATCTGAAGATGTAAATATTACTGGGATACATCAAGATAACCAGGATAAGAATGAATATAGTCAAACTGCTGAACTGGGTTCTGAAGATGCTGCAGTTGATAATGATGACAAATCACACACAAGATCTTCAAGAGGAAAAGGGAAAGAAAAGGTTGACAAAAGTAACGGGGTTGATGGAGAAGCGGATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCAATGATGAGGAGAAGATGAGACTTGACGAGCAAGCTTCCCAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGATCCGAAGCCATCAAAGCGTATCTGTTCCTACATGGACAGGAAGGTCGGGAACTGCTGGTGCACCATCATCTGCTCGGCGGAAGTTTGGTTCAACCGTGAAACCCCAGTTGCTAAACAATAGCAAAGCATCTGATGAATTGCCAAGCAGCGGATCCAACAAATTCAATGGATATGCTGCTGGGGCATCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCATCAGTGCTGGGCTTGAGCATCAGCTTGGTATGTCGTCAAGTTCCAGAAATCAATCAAGATCTATAGATGTTAGAACTACAAGGGCTCCTGAAAATTCATCTGGATTCCAACCTGAAGTAATGATTCGGAAAATCTGTACCTTTTTCGAACAGAAAGGTGGCAGGTGTAGTTCAGATAGCATAGTTCAGCATTTCAAGGACAGGATCCCCTCAAAAGATCTTGCCCTGTTCAAGAATATGTTAAAGGAAATAGCAACGCTGCAGAAAGGATCAAATGGTTCCCATTGGGTTCTGAAGCCAGACTATCAAGAATAG 3675 0.4139 MEEEQDRFLLTTLGVKSANPEDIERHVLQKATRNDSVTVTEAERNTDKKEGSTLPENVDPLFTAKAELHQKLRAIEFEIGAVSSTIQRPRDVDKGEDNGDVGEENENVEEGIGEGAGSELQRALAADRLRSLKNTKAQLEKELSRFSKDGDSKSTERKKVIFSLVKEDRRPKKKLKDDKKLSKRPAKRFKTVSFDDDADFDAVLDAASAGFVETERDELVRKGIFTPFHKLKGFERGIQQPQASTSRNAAEQENTDDRVLPSVERAARSFSQAARARPTSKLLQPEELPKLDAPTIPFRRLKKPLQLPQPIDSGEDLNTDSKRKKRRPLPGRKWTERISSEDRQLEESENANGCLDTSSCESLEVHDVELSEHESYVTLEGGLKIPSNIFEALFDYQKVGVQWLWELHCQKTGGIIGDEMGLGKTIQVLSFLAALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELLHDSAQDLASKKKRAGSDGTDSESNSSSDNDYERSVPSKNTRKWETLINRVMRSQSGLLITTYEQLRILGDQLLHIDWGYAVLDEGHKIRNPNAEVTLACKQLQTVHRVIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVMLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHTYRRMDGLTPVKQRMALMDEFNASIDIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVDGETGSTETSNIFSQISEDVNITGIHQDNQDKNEYSQTAELGSEDAAVDNDDKSHTRSSRGKGKEKVDKSNGVDGEADILKSLFDANGIHSAMNHDLIMNANDEEKMRLDEQASQVAQRAAEALRQSRMIRSHQSVSVPTWTGRSGTAGAPSSARRKFGSTVKPQLLNNSKASDELPSSGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAISAGLEHQLGMSSSSRNQSRSIDVRTTRAPENSSGFQPEVMIRKICTFFEQKGGRCSSDSIVQHFKDRIPSKDLALFKNMLKEIATLQKGSNGSHWVLKPDYQE 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02822 1224 MobiDBLite consensus disorder prediction 332 349 - -
Trre2g02822 1224 CDD DEXHc_ERCC6 393 603 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 235 353 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 1035 1056 - -
Trre2g02822 1224 FunFam DNA excision repair protein ERCC-6 661 940 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 491 505 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 953 979 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 31 58 - -
Trre2g02822 1224 FunFam Protein CHROMATIN REMODELING 8 371 653 - -
Trre2g02822 1224 Pfam SNF2-related domain 396 718 IPR000330 GO:0005524|GO:0140658
Trre2g02822 1224 MobiDBLite consensus disorder prediction 482 508 - -
Trre2g02822 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 405 604 IPR014001 -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 85 119 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 40 54 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 1034 1087 - -
Trre2g02822 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 741 900 IPR001650 -
Trre2g02822 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 656 910 IPR027417 -
Trre2g02822 1224 CDD SF2_C_SNF 736 861 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 1065 1087 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 950 979 - -
Trre2g02822 1224 Gene3D - 660 952 IPR027417 -
Trre2g02822 1224 SMART ultradead3 389 612 IPR014001 -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 1125 1156 - -
Trre2g02822 1224 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Trre2g02822 1224 CDD CSB_WHD 1157 1223 - -
Trre2g02822 1224 Coils Coil 122 149 - -
Trre2g02822 1224 Coils Coil 1013 1033 - -
Trre2g02822 1224 SMART helicmild6 767 850 IPR001650 -
Trre2g02822 1224 Gene3D - 364 653 IPR038718 -
Trre2g02822 1224 PANTHER SNF2/RAD54 FAMILY MEMBER 154 1206 - -
Trre2g02822 1224 MobiDBLite consensus disorder prediction 1127 1154 - -
Trre2g02822 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 654 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02822 Trre-Chr2 24421372 24427914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02822 693 903 RAD5 or RAD16-like Gene Family AT5G22750 31.308 1.74e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g02822 SNF2_N 8.4e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02822 K10841 - gmx:100820025 1885.92