Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02817 ATGATGAAAGTGGGATTTGAAGTTCTTCATGCAAATCCAAACATGATTCATCCTCACATGCATGAAACATGGGATTATACAATCATTGCAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCAAAACCACTAACAGAAAATCACTCCCTAAACTTAGGACAAAATAATGAGGTATGTGATTGGGTTGAACACCTTACTAAACACTTTGGTGAAGATAACTTACCACAAAACACTTCTGATAATAATATTCATAATCTTCACATTCAAACAAACAACACCTTAGATTTAATTCATAATAATAATGATTATGAATGTGATCAAGGGTTGAATTTGATAACCCTTTTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCTTGGTGAAGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAATCATCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATAAGTAGAGTCATGAATTCATGGCTTGGAGTATGTTCACCTTTGATTGATCATAGAACCATTCACTCAGCACTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCGGTGAATCGTTGTAACGACATCCATATCATTGATTTGGATATCATGCAAGGTCTTCAATGGCCGGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGACCAAAGGTCCGGATGACAGGGATGGGAGCGTCGATGGAGCTTCTTGTTGAGACGGGAAAAAACCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTGTTTGGAATTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTGCAAATTAGACCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTGTTGAGGAATTGGAACCAAGAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGTTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCAACACTTTTTGATTCTCTTGGATCATATTTACATAGTGATGATGCTAATAGAAACATTGTTGAACATAGTCTTCTCTCTAAAGAGATTAACAATATATTGGCAATAGGAGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAGCTTGTTGCAAGTAATAGTTTTGAGCAAGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAATTGATATTGAACATGTTTTCACCAGCTCATGGTTATAGTCTTTCTCAAATTGATGGCATGTTAAGGCTTGGATGGAAAGATACTAGTTTGTATACAGCTTCTTCTTGGACTTGTAGAACTTCTAGGTAG 1434 0.3654 MMKVGFEVLHANPNMIHPHMHETWDYTIIANDLLLPPPIQTNPYPKPLTENHSLNLGQNNEVCDWVEHLTKHFGEDNLPQNTSDNNIHNLHIQTNNTLDLIHNNNDYECDQGLNLITLLMECAVAISVENLGEAHRMLLELTQLASPYKSSCAERVVAYFAKAMISRVMNSWLGVCSPLIDHRTIHSALQVFNNISPFIKFSHFTSNQAILEAVNRCNDIHIIDLDIMQGLQWPAFFHILATRMEGRPKVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLVEELEPRIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDANRNIVEHSLLSKEINNILAIGGPKRSGEEKFRLWRSELVASNSFEQVPMSANSMAQAQLILNMFSPAHGYSLSQIDGMLRLGWKDTSLYTASSWTCRTSR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02817 477 Pfam GRAS domain family 115 472 IPR005202 -
Trre2g02817 477 ProSiteProfiles GRAS family profile. 106 472 IPR005202 -
Trre2g02817 477 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 93 468 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02817 Trre-Chr2 24387138 24388571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02817 92 475 GRAS Transcription Factor Family AT3G54220 51.646 4.15e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre2g02817 GRAS 2.8e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02817 - - mtr:25484238 897.886