Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02816 ATGGATCATGTGATTGGTGGAAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGCTCTTTTGGGGAGCTCTATCTAGCTGTAAATATACAAACTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGACATCCGCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGAATTCCCCACCTGAAATGGTTTGGTGTTGAGGGAGAGTACAATGTCATGGTTATTGACCTTCTTGGACCAAGTCTGGAAGATTTATTCAATTATTGTAACCGGAAATTCACATTGAAGTCAGTGTTGATGCTTGCCGAACAATTAATTAACAGAGTTGAATACATGCATTCAAGAGGCTTTCTTCACCGAGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGGCGTAAAGCAAATCAAGTGTACGTCATTGACTACGGTCTTGCGAAAAAATATAGGGATCTTCAAACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGCCGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCCTGGCAAGGACTGAGGGCTGGAAACAAAAAACAAAAATATGATAAAATTAGTGAGACAAAGGTGTCAACTTCGATAGAGTATCTATGCAAATCATATCCGTCTGAGTTTGTATCATACTTTCACTATTGCCGATCATTGAGGTTTGAGGACAAGCCAGATTATTCATACTTGAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTGTTTTGAAGTATCCACAAATTGGTGGCACTTCTAGAGGACGGCATGGAACTGGCAAGGCAGCTATGTATGCAGCTACACCTGGACGACCCGACAAGACACCTGCACGTCATCCAGAAAGGACACCTGCACGTTATCCAGAACGAACACCTGCACGTTATCCAGAAAGAACACCTGCACGTCAACCAGAAAGGATGACAGTCGGGAGAGACATTCGAGAGAAATTATCTGGTGCTGTTGAAGCATTCACCCAGAGGAACCGCCCAAATGCTACTCCTCATCATGGTGAACACGTCAGGCGTAAGACTTATGACGAAGTGCAATATGCCCAACACAATCCAACTAGATATGAAAGCAATTCGAGAAGAGCCGTGATATCATCAAGCAAGCCAAATTACTCAGGTGACCATACTGGCAGGATGGCTTCAAATGGGGCCCGTCCATCTGCCGCGCATAGAGGTCAACCTGTGTATGAGACTAGACAACCAACTTTTGCGCGTAATGGGTCTATGAGAGGCAACCGTGATGATCCTCTGAGGAGCTTTGAACTCCTCACTATCAGGAGGTAA 1440 0.4403 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLAEQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISETKVSTSIEYLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGGTSRGRHGTGKAAMYAATPGRPDKTPARHPERTPARYPERTPARYPERTPARQPERMTVGRDIREKLSGAVEAFTQRNRPNATPHHGEHVRRKTYDEVQYAQHNPTRYESNSRRAVISSSKPNYSGDHTGRMASNGARPSAAHRGQPVYETRQPTFARNGSMRGNRDDPLRSFELLTIRR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02816 479 FunFam Putative Casein kinase I 1 85 - -
Trre2g02816 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre2g02816 479 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02816 479 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre2g02816 479 FunFam Casein kinase 1-like protein 1 328 - -
Trre2g02816 479 MobiDBLite consensus disorder prediction 323 354 - -
Trre2g02816 479 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02816 479 MobiDBLite consensus disorder prediction 301 354 - -
Trre2g02816 479 MobiDBLite consensus disorder prediction 402 467 - -
Trre2g02816 479 Gene3D Transferase(Phosphotransferase) domain 1 1 325 - -
Trre2g02816 479 PANTHER CASEIN KINASE-RELATED 9 382 - -
Trre2g02816 479 MobiDBLite consensus disorder prediction 402 429 - -
Trre2g02816 479 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02816 479 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Trre2g02816 479 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02816 Trre-Chr2 24372770 24379008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02816 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 2.63e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre2g02816 Pkinase 7.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02816 K08960 - gmx:100789031 756.518