Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02805 ATGAAGTTCCTACGCTCAGGGGAGCAGCAATTGGGAGGAGGACGAGAAACTGATGAAACCTACCCTTCATCTCATCAATCTCTTGTCACCAATGATTTTTTCTCAGCAAGTAGTGCTCATTCTTTCCTACCTGGAAAATTTTATGATGATCTCAAGCCCGACACTGGCAATATAGAAGAAGCAGAATTATCTTTGCGTGAGAGTGGTGTATTGAACTATGAGGAAGCTAGAGCACTGCTAGGAAGATACGAGTATCAAAAAGGAAATCTAGTATCTGCTTTACATGTCTTTGAGGGAATAGATATAGGTGTTGTGACTCCTAAGATCAAAATTGCCCTTTCAAGAAACAAAGAACGCCGCAAGAAACATTCCCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTCGGCTTACTGTTGGAATCACTCTTCCTAAAAGCAAAATCTTTGCAGGCTCTTGAAAGGTTTAAAGAAGCTGCGCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCCGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTTGAGCTACTTCCAGAATTGTGGAAGCTTGCTGATTGTCCACGTGAAGCTACTTTGTCTTATCGGCGAGCCCTCCTTCATCAATGGAATCTTGATGCGCGGACGACATCAAAGATTCAGAAAGAATTTGTAGTTTTTCTTCTATATAGTGGAGGAGAAGTAATGCCCCCGAATCTGCGTTCCCAAATGGATGGCTCGTTTGTACCAGGAAACAACATAGAGGAAGCTATACTTCTTCTAATGATTTTGCTGAGAAAAGTCTCTCTCAAGAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTGTCGGTTTCAGGAGATTTATCGAGTTTAGCCAATAATTTGGAAGAACTGCTCCCTGGAATTATCCGTCGAAGCGAAAGATTCCACACTCTAGCTCTTTGTTATTATGGAGCAGGTAAGGACTTGGTGGCACTTGATCTTCTCAGAAAATTGTTGAACGGTAGAGAAATGCCAAAACATGTTCACGGTTTGTTAATGGCTTCTAAAATTTGTTGTGAGAACCCTACCCTTGCAGAAGAAGGTGTAAGCTTTTCTCAGAGAGCGGCTGAGAGTTTGGACGGAAGATGTAAGCAGTTAGAACATGTGGTGAAATTCTATCTTGGTGTTTCATTATCGGCACACTCGAAATTAGCCGTTTCTGATGTCGAGAAGTTTAAGAGACAATCTGAGGCACTTCAAGCTTTGGAAACTGCTGGCAGAATGACCGGAATGAGAGACCCTCTAGTACTATACCATCTCAGTTTAGAATACGCAGAACAAAGGAAGTTGGATGACGCACTTTATTATGCAAAGTGCGTTATAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTGTTGGCTCGGATATTATCTGCCCAAAAAAAGTTTTTGGAAGCCGAATCTATTATTAACGCTGCTTTGGATCAGACTGGCAAATGGGATCAGGGTGATTTGCTGCAAACAAAAGCTAAGATTCAAATTGCACAGGGCCAGTTAAAGAATGCCATTGAGACATACAGTCAGCTTCTTGCTGTTCTTCAAATTCAGAGAAAAAGTTTTGGTTCTTGGAAGAAGCTATATAAGGACAATCGAGATCTTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTGTACATCAGTCTTTCCCAGTGGCATGATGCAGAGGTGTGTCTTTCAAAATCTAAAGCCATCAAACCATACTCCGCTTCTAGATGTCATGCACTAGGTATAATGTATGAAGCGAAGGGCCTTTACAACGAGGCTCTAAAAGCTTTTGGTGATGCTTTGAACATTGAGCCTGGCCATGTTCTCAGCTTAATATCAACTGCTGTAGTACTTAAACGTTGCAGTAACGAATCAAATCCTGCAGTCAGAAGTTTTTTGATGGATGCATTACGGCATGACAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTTTATCACAAGGCTGAGGGTACAGTCTCATCATTGGTTGAAGCTACAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTACTCCACTCGAACCTTTCAGATGA 2166 0.4151 MKFLRSGEQQLGGGRETDETYPSSHQSLVTNDFFSASSAHSFLPGKFYDDLKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVSALHVFEGIDIGVVTPKIKIALSRNKERRKKHSHNHGEPEMSIHSVGLLLESLFLKAKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLHQWNLDARTTSKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLKRIEWDPSILDHLSFALSVSGDLSSLANNLEELLPGIIRRSERFHTLALCYYGAGKDLVALDLLRKLLNGREMPKHVHGLLMASKICCENPTLAEEGVSFSQRAAESLDGRCKQLEHVVKFYLGVSLSAHSKLAVSDVEKFKRQSEALQALETAGRMTGMRDPLVLYHLSLEYAEQRKLDDALYYAKCVIKLEGGSNVKGWLLLARILSAQKKFLEAESIINAALDQTGKWDQGDLLQTKAKIQIAQGQLKNAIETYSQLLAVLQIQRKSFGSWKKLYKDNRDLARNLEVEIWHDLAHVYISLSQWHDAEVCLSKSKAIKPYSASRCHALGIMYEAKGLYNEALKAFGDALNIEPGHVLSLISTAVVLKRCSNESNPAVRSFLMDALRHDRLNASAWYNLGLYHKAEGTVSSLVEATECFQAAQSLEESTPLEPFR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02805 721 Gene3D Tetratricopeptide repeat domain 574 717 IPR011990 GO:0005515
Trre2g02805 721 Gene3D Tetratricopeptide repeat domain 45 573 IPR011990 GO:0005515
Trre2g02805 721 PANTHER PROTEIN NPG1 16 721 IPR043376 -
Trre2g02805 721 SUPERFAMILY TPR-like 521 712 IPR011990 GO:0005515
Trre2g02805 721 SMART tpr_5 519 552 IPR019734 GO:0005515
Trre2g02805 721 SMART tpr_5 448 481 IPR019734 GO:0005515
Trre2g02805 721 SMART tpr_5 609 642 IPR019734 GO:0005515
Trre2g02805 721 SMART tpr_5 141 174 IPR019734 GO:0005515
Trre2g02805 721 SMART tpr_5 575 608 IPR019734 GO:0005515
Trre2g02805 721 SMART tpr_5 679 715 IPR019734 GO:0005515
Trre2g02805 721 SMART tpr_5 483 516 IPR019734 GO:0005515
Trre2g02805 721 Pfam Tetratricopeptide repeat 610 641 IPR019734 GO:0005515
Trre2g02805 721 ProSiteProfiles TPR repeat profile. 609 642 IPR019734 GO:0005515
Trre2g02805 721 SUPERFAMILY TPR-like 427 548 IPR011990 GO:0005515
Trre2g02805 721 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02805 Trre-Chr2 24215221 24218803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02805 1 721 Calmodulin-binding Proteins AT4G28600 57.026 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02805 K21843 - gmx:100800762 1117.06