Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02799 ATGGCCTCAAAAGCCTTAACCACTGGCTCTCACTCCCGAAATGGACACCGTTTCTCAGTGTTTGATGACTCAGATGAGGAAAATGGAGACTTCAGTCAGCAGCAACCGAAACACAATAACCATGCTTTCTCTTTGGATGGAAGTGTAGCTAGTAAGGATTTTGAAGAACAGAAATCAATCAGCTATAATGCGGATAAAGAGAAAGGAAAGCAGGAAAAGAGAAGTCTTATGAGCAATGACATAGGAGAAGATGATTACCTTTTGGCCCTGTCAAGGCAACCGTTATGGCGCAAAGTCCCAATAGCTTCGAGCCTAATCAATCCATATCGTATAGTCATAGTCATGCGTCTTGTTGTCCTAGTTTTCTTCTTCCACTTCCGCATCACAACTCCGGTTCATGATGCATTTGCATTATGGATAATCTCCTTGGTCTGCGAAATATGGCTCTCTTTGTCTTGGATAGTAGACCAGTTCCCCAAATGGTTCCCCATGACTCGCGAAACTTACTTGGAGCGCTTGTCAATGAGATTCGAGCGTGAAGGGGAGCCGAACCTTTTAGCCTCAGTTGATGTCTTTGTTACCACTGCAGACCCTTTGAAGGAACCACCTATTATAACAGCAAACACAGTTCTCTCAATCTTGTCTGTTGATTATCCTGTTGACAAAGTTAGCTGCTATGTCTCCGATGACAGTGCATCTATGCTTCTCTTCGATACTTTGTCACAAACTTCTCAGTTTGCAAGAATATGGATTCCATTTTGTAAGAAGCATAACATTGAGCCAAGGGCACCTGAGTCTTATTTTTCTCAGAAAGTTGATTACTTGAAAGACAAGGTACATCCAACATTTGTAAGGGATCGCAGGGCTATGAAGAGAGAGTATGAAGAATTCAAGGTGAAAATTAATGTACTTGTTGCAAAGTCTCAGAAAAAACCAGAAGAAGGATGGGTGCTGCAAGATGGTACTTCATGGCCTGGGAATAACACTGACGATCATCCAGGAATGATTCAGGTTTGTCTGGGAAGTGCTGGTGCTCTTGACAATGAAGGCAAGGAGCTGCCACGGCTTGTGTATGTTTCGCGCGAGAAATGTTCCGGCTATCAGCACCATAACAAAGCTGGAGCCATGAATTCTCTGCTTCGAGTTTCTGCTGTGCTTAGCAATGCACCTTTTGTGTTGAATCTGGATTGTGATCAATACATCAATAATAGCAAGGCTCTTAGGGAGGCTATGTGCTTCCTAATGGACCCTTTACTTGGAAAGAAGACCGCTTATGTTCAATTTCCGCGAAGGTTTGATGGTATCGACGGCAGCGACCGATACGCCAATCACAACACTGTATTCTTTGATATCAATATGAAATGCCTTGATGGGATTCAAGGTCCTGTGTATGTTGGTACTGGATGTGTGTTCAACAGGCAGGCATTATATGGCTACAAGCCACCATCTGAGAAAAGACGAAAGACAAGCTTTTCCCCATTTAATCTTGAAGAGATTGATGATGGGATTGAAGACTATGATGATCAAGAGGAATCGTCCTTCATGTCCGTCAAAAAATTTGAGAAGAAGTTCGGAGAGTCACCAGTTTTCATTGCTTCTGCATTGATGGAAGACGGTGGACTTCCAAAAGGAACTAATACTCGAATACTGATGAAGGAAGCCATTCATGTAATAAGTGTTGGATATGAAGAGAAAACTGAATGGGGCAAAGAGATAGGGTGGCTTTATGGTTCAGTCACAGAAGACATTTTGACAGGGTTTAACATGCATTGTAGAGGATGGAAATCAGTGTACTGCATGCCTAAAAGAGCAGCTTTTAAAGGATCTGCTCCTATAAACATATCAGACAGATTACACCAAGTTCTGAAATGGGCATTGGGTTCTACGCAGATATTTTTTAGTGCCTATTGTCCATTGTGGTATGGCTATAGTGGAAAACTGAAATGGCTTCAAAGGCTCGCTTACACGAATGCTATCGTTTATCCTTTCTCTTCCATCCCTCTTCTTGTGTACTGCACAATTCCAGCTATCTGTCTTCTGACTGGAAAGTTCATCCTCCCCACTATGACAAGCCTTGCAAGCATTTGGTTGATGGCTCTATTTATCTCCATCATTTTAACTTGTGTGTTAGAGCTTCGTTGGAGTAAGGTTAACATTCAAGACTGGTGGCGCAACGAACAATTCTGGGTCATTGGAGGTGTTTCTGCACATCTATTTGCAGTGTTTCAAGGCCTCCTTAAAGTTGCAGGACTCGGCACTAATTTCACCGTGAGAACGAAATCAGCAGACGACGCTGCATTCGGTCAGCTCCATCTCTTCAAGTGGACTAGTCTTCTCATCCCTCCAACAAGTATTGTAATCTTGAATATGGTGGGAATTGTAGCTGGAGTCTCTGAAGCCATTAACAGTGGCTATAACGCATGGGGACTTTTATTTGGAAAGGTTTTTTTCTCTTTATGGGTCATTGTTCACTTGTATCCTTTCCTCAAAGGTCTACTCGGAAGGCAAAACAGAACACCTATCATAGTAGTTCTCTGGGCAACACTTCTAGCATTGATTTTTTCGATGATTTGGGTGAGAATCGATGTTTTCTTGCCCAAGAAAATAGGTCCCGTACTCACACAATGCGGGGTAGAATGCTAA 2643 0.4264 MASKALTTGSHSRNGHRFSVFDDSDEENGDFSQQQPKHNNHAFSLDGSVASKDFEEQKSISYNADKEKGKQEKRSLMSNDIGEDDYLLALSRQPLWRKVPIASSLINPYRIVIVMRLVVLVFFFHFRITTPVHDAFALWIISLVCEIWLSLSWIVDQFPKWFPMTRETYLERLSMRFEREGEPNLLASVDVFVTTADPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDSASMLLFDTLSQTSQFARIWIPFCKKHNIEPRAPESYFSQKVDYLKDKVHPTFVRDRRAMKREYEEFKVKINVLVAKSQKKPEEGWVLQDGTSWPGNNTDDHPGMIQVCLGSAGALDNEGKELPRLVYVSREKCSGYQHHNKAGAMNSLLRVSAVLSNAPFVLNLDCDQYINNSKALREAMCFLMDPLLGKKTAYVQFPRRFDGIDGSDRYANHNTVFFDINMKCLDGIQGPVYVGTGCVFNRQALYGYKPPSEKRRKTSFSPFNLEEIDDGIEDYDDQEESSFMSVKKFEKKFGESPVFIASALMEDGGLPKGTNTRILMKEAIHVISVGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRAAFKGSAPINISDRLHQVLKWALGSTQIFFSAYCPLWYGYSGKLKWLQRLAYTNAIVYPFSSIPLLVYCTIPAICLLTGKFILPTMTSLASIWLMALFISIILTCVLELRWSKVNIQDWWRNEQFWVIGGVSAHLFAVFQGLLKVAGLGTNFTVRTKSADDAAFGQLHLFKWTSLLIPPTSIVILNMVGIVAGVSEAINSGYNAWGLLFGKVFFSLWVIVHLYPFLKGLLGRQNRTPIIVVLWATLLALIFSMIWVRIDVFLPKKIGPVLTQCGVEC 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02799 880 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 686 IPR029044 -
Trre2g02799 880 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 295 480 IPR029044 -
Trre2g02799 880 MobiDBLite consensus disorder prediction 1 15 - -
Trre2g02799 880 FunFam Cellulose synthase 306 480 - -
Trre2g02799 880 Pfam Cellulose synthase 486 871 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trre2g02799 880 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 93 844 - -
Trre2g02799 880 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02799 Trre-Chr2 24176687 24180761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02799 25 880 Cell Wall Biosynthesis AT5G17420 63.585 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02799 K10999 - gmx:100777278 1454.11