Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02794 ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCTTCATTGCAATGAAAGCTCTTGGGATTGCTGAAGCAAAAGTAAAACCGGTGTTAAAAAAGCTCCTCAAATTGTATGACAAAAATTGGGAACTTATCGAGGAAGGGAACTATAGAGCTCTTGTGGATGCTATATTTGATGAAGGCGATAATTTTGAGGAGCCAGAACAGCAAAAGAAAAACAAGAGAGTTAATGAAGAAGAGACGGAGGCCGAAAAAGCTCCGATAAATGGTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCATCAAAGAAGCCTCACATAGAAAAGGCCAATGCACTCGAGGGCTTCTCTGCGCAGCAGTCTCATAACAAAGTAGTGTCATCTGAGGGAAATGTGAGGATTGCAGCACATCCAAGTCCTATACGAGATACCAGTTCTGACAGGGGAAAGCAACCTGCATCACCTCAAGTTTCTCTTGGAGGAAGACAACATGTATCTGAAAGAGCATCTCCATCTAAACATCTGTTGCAAAGCTACCAAACACCTCATGCTTATACAACAGTCAAACCGGAGCCTGTTGATGAGGCTGATTACGAGGTTCCCATTGCAATGATTGCTCCTGAACCATCAAGTTTAAGGCACTCATCGATGAAGAATGGCAGTACTAGAAAGCAGCAAGGTGGCAATGTCTCTATGGCTTCTGATGTTGTGCTAGCTTCTTCAGCTCAGGGAGAAGTAAAACTTTCTCTGAGCTGCAGCTCAGCAATCCAGGGATCAGATTTTCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCAATTATATAAAATTACTGACCCAACCTTTTCTGTCACAAAAATGTTGAAGGATATATGTGATTGCATGTTGGAATTTACTACCAATTCAAATGATGATGCACAAGAAGGTTCTATGACAAGATCAAGCATTGATGTGTCAAAGGAATCAGATGTTAATGGCACTCCCGGCATTGAGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCGCCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCAAGATGGACAGGACAGATGATATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGCCTACAAATTCACTCAGTTTAGTAGTTGTTCCAAATCATCAGCTTACAGCAGATGATATAAGGTCTTTTCATGATGTTAACGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAAACTACTAATGATTTCCCACCACCTTTCAGCTACATACCCCAAAACCTTGTGTTCCAAGATGCAAGTGTCAAAATTTCTTTATCTCGTATTGGGGCCGAGGACTGCTGTTCCTGTATCGGAAGTTGTGTCTTGTCAACAAATTGTGCCTGTATAGATAAATCTGGGGGCGAAGTTGCATATACTGCTCAAGGCCTAATGAAGGAAGAATTTTTGGAAGAATGCATTGCTATTAATCACAATCCTCAACAACATTGCTTTTATTGCAACGATTGTCCACTTGAAAGGTCCAAGAGTTATGGTTGTTTGGAACCATGCAAAGGACATTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGCAACCGCGTTATCCAGCGAGGAATAGCATACAGCTTGCAGGTATTTTTCACTTCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGACCTGCCAAAAGGAGCATTTGTGTGCGAGTTTGTTGGAGAAATTTTAACTATTAAAGAGTTGTATGAAAGGAATATGAAATGCGCTGAAAATGGCAAATCTACATACCCAATTCTACTGGATGCAGACTGGGATTCAGGGTTTATGAAGGACGAAGAGGCTCTGTGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGATGTTCTGATGCAAACTTGGTTGTAATCCCAATTCAAATGGAGTGTCCAGATCGTCACTACCATCATTTTGCCCTTTTCACTACCAGAAAAATAGCAGCACATGAAGAGCTCACTTGGGACTATGGCATTGACTTTGATGACCATGATCAACCTGTCAAACTGTTTCAGTGCAAATGTGGCAGCAAGTTCTGCAGGAATTTGAAGCGATCAAACAGGTCCGCTAGATCTGCGTTAATTGCTGGATGA 2310 0.4225 MAPRPNPKIAAAFIAMKALGIAEAKVKPVLKKLLKLYDKNWELIEEGNYRALVDAIFDEGDNFEEPEQQKKNKRVNEEETEAEKAPINGESARPLKRLRLRGENNSPSSASSPSKKPHIEKANALEGFSAQQSHNKVVSSEGNVRIAAHPSPIRDTSSDRGKQPASPQVSLGGRQHVSERASPSKHLLQSYQTPHAYTTVKPEPVDEADYEVPIAMIAPEPSSLRHSSMKNGSTRKQQGGNVSMASDVVLASSAQGEVKLSLSCSSAIQGSDFRMPTQEQLLKMMEDKCLQLYKITDPTFSVTKMLKDICDCMLEFTTNSNDDAQEGSMTRSSIDVSKESDVNGTPGIEGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSKMDRTDDIPQSDVRMQPEDPVPTNSLSLVVVPNHQLTADDIRSFHDVNDLTKGEENNQISWVNETTNDFPPPFSYIPQNLVFQDASVKISLSRIGAEDCCSCIGSCVLSTNCACIDKSGGEVAYTAQGLMKEEFLEECIAINHNPQQHCFYCNDCPLERSKSYGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGIAYSLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELYERNMKCAENGKSTYPILLDADWDSGFMKDEEALCLDAASFGNIARFINHRCSDANLVVIPIQMECPDRHYHHFALFTTRKIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNLKRSNRSARSALIAG 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02794 769 MobiDBLite consensus disorder prediction 126 140 - -
Trre2g02794 769 CDD SET_SETDB-like 466 730 - -
Trre2g02794 769 MobiDBLite consensus disorder prediction 157 190 - -
Trre2g02794 769 ProSiteProfiles SET domain profile. 597 730 IPR001214 GO:0005515
Trre2g02794 769 Gene3D SET domain 432 756 IPR046341 -
Trre2g02794 769 SMART preset_2 442 581 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g02794 769 MobiDBLite consensus disorder prediction 102 116 - -
Trre2g02794 769 Gene3D - 1 62 IPR043017 -
Trre2g02794 769 ProSiteProfiles Pre-SET domain profile. 493 594 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g02794 769 MobiDBLite consensus disorder prediction 60 190 - -
Trre2g02794 769 SMART set_7 597 736 IPR001214 GO:0005515
Trre2g02794 769 Pfam Ubiquitin-binding WIYLD domain 8 61 IPR018848 -
Trre2g02794 769 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 764 - -
Trre2g02794 769 MobiDBLite consensus disorder prediction 63 86 - -
Trre2g02794 769 MobiDBLite consensus disorder prediction 320 340 - -
Trre2g02794 769 SUPERFAMILY SET domain 453 753 IPR046341 -
Trre2g02794 769 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 769 IPR025776 -
Trre2g02794 769 MobiDBLite consensus disorder prediction 320 362 - -
Trre2g02794 769 Pfam SET domain 609 730 IPR001214 GO:0005515
Trre2g02794 769 Pfam Pre-SET motif 446 589 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02794 Trre-Chr2 24132872 24138301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02794 444 753 Su(var)3-9 homologs AT1G73100 30.183 1.12e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g02794 Pre-SET 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02794 - - gmx:100787369 966.066