Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02788 ATGTCAAGTGTGTCTAAAGATGAAAACTTGGCACTTTCTTCTGAGGATTCTTCTAGCCCAGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACCCTACAAAATCACACCAGTATCATCATCATCATCATAATCATAATCAGAATGGTTCTTCTTATGCTAGAATTTTCACTGCTAAGGATTTTTCTTCTTCACCTTCTTCTGTTGGAATTGGAACCAAAAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCACTTCGAACATATCGAGTGAATAGCTTTAATGCCAACACTAAATCAACTGAAGCATTCAACTCTGTGGCCGAGAAGAGCAAGAACAATAATACTGCGGTAAGGAAGAGTGCTGACAATGGAAATGATGATAACATCGTTAATATCAAAGAAAAAAGGCACCTCAGGAATTCCCCGTTTGTCAAAGTAAAAATGGATGGAATACCGATTGGAAGAAAGATTGATTTGAGTGCTCACAGTTCCTATGAAACATTGGCACAAACATTGGAGGACATGTTTGACGAATCAACTACAAATGTCACTTGCAAAGGATCAAATGGGGAGGACCACAACATGAATATCAGAAGAGAAAGGCATTCAATACTGTTGGATGGATCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGATGTTCCTTAGTTCGGTAAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCACCGAGATTGGAAGAAAAGAATAGCAGACAGAAAAGCAAGCCCATATAA 846 0.4066 MSSVSKDENLALSSEDSSSPDESELELGLGLSLSHPTKSHQYHHHHHNHNQNGSSYARIFTAKDFSSSPSSVGIGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANTKSTEAFNSVAEKSKNNNTAVRKSADNGNDDNIVNIKEKRHLRNSPFVKVKMDGIPIGRKIDLSAHSSYETLAQTLEDMFDESTTNVTCKGSNGEDHNMNIRRERHSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVRRLRIMRTSEANGLAPRLEEKNSRQKSKPI 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02788 281 Gene3D - 149 271 - -
Trre2g02788 281 MobiDBLite consensus disorder prediction 120 140 - -
Trre2g02788 281 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 264 IPR003311 GO:0005634|GO:0006355
Trre2g02788 281 MobiDBLite consensus disorder prediction 120 141 - -
Trre2g02788 281 MobiDBLite consensus disorder prediction 1 27 - -
Trre2g02788 281 Pfam AUX/IAA family 54 268 IPR033389 -
Trre2g02788 281 MobiDBLite consensus disorder prediction 1 18 - -
Trre2g02788 281 MobiDBLite consensus disorder prediction 34 53 - -
Trre2g02788 281 SUPERFAMILY CAD & PB1 domains 150 257 - -
Trre2g02788 281 ProSiteProfiles PB1 domain profile. 154 261 IPR000270 GO:0005515
Trre2g02788 281 FunFam Auxin-responsive protein 149 269 - -
Trre2g02788 281 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02788 Trre-Chr2 24073500 24076848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02788 147 268 B3 DNA Binding Superfamily AT1G59750 33.607 2.51e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre2g02788 AUX_IAA 1.1e-61 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02788 K14484 - gmx:100779400 362.459