Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02780 ATGGGTATCCCACAATTTCTCGATAAAATCTCATCTTTACCAACTTTATATTCTTCACAATCGTTAAATAATCTTTCCAGCACGATTCTAGGATTGTCTGTATTGGAACTTGCAGCAGTATGTGTGAACCTGACACTTGTTGTCTTGTTTCTCTTTGTTGTTTCTGTGAGAAAGATTCTTGTGTATAAGAGAATTCGAATTGGTAAGGACAGCACCAGTGAGAATGATAGTCCAATTTGCAGTGTTATTGATGGAGAAATAACAACAACAAGTGATGTTTCAATTAGTGTTTGGTTCAAGTTATCTATGTTGTCTTGTTTCTATGTTTTGTTTGTTCAAGTTTTGGTATTGGGTTTTGATTTGGGTGCTTTCATTTGGGGTGAAGCTAATGAGAAAGTAGTACACTGGTCTCTACTTTCTGTGCCAGCTTCACAAGTTTTAGCTTGGTCTGTGTTAAGTTTCTCAGCTTTGAATTGCAAATTTAAGGTGTTAGAGAAGTTTCCATTCTTGTTAAGAGTTTGGTGGCTTTTGTCATTTTTTATTTGCTTGTGTACTTTATATGTTGATGGAAGAGGGGTTTGGTTGGAAGGTTCTAAGTACTTTTGTTCTCATGTTGTTGCAAATTTTGCTGTCACTCCAGCACTTGCTTTTTTAGGTGTAGTTGCAATCAGAGGTGTTACTGGTATACAAATTGGTAGAAACTTTACTCTTCAAGAGCCATTACTTGTTGAAGAAGAAGAACTAGGGTGTCTTAAGGTTACTCCATATAGGGATGCAGGAATATTTAGCTTAGCTACACTTTCTTGGTTGAATCCACTTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTTAAGGACATTCCTCTTGTTGCACCAAGCGATAGAGCCAAGGCAAGTTACAAGATTGTGAATTTAAATTGGGAGAAATTGAAGGCTGAAAATCAAAATCCCTCTAAGCAACCTTCATTAGCTTGGGCTCTTCTCAAGTCATTTTGGAAGGAAGCAGCTGTGAATGCTATCTTTGCTGGTTTGAATACTTTGGTTTCATATGTAGGTCCTTACATGATAAGTTACTTTGTTGATTTTTTGGGTGGTAAAGAAACTTTTGCTCATGAGGGTTATATCCTTGCTGGTATATTCTTCTCGGCGAAGCTTGTGGAGACACTGACAACTAGGCAGTGGTATCTAGGAGTGGATATATTAGGTATGCATGTTAGGTCAGCTCTAACTGCAATGGTGTATAGGAAGGGACTCAGACTCTCGAGCTCGGCGAAGCAAAGTCACACAAGTGGAGAGATTGTTAACTACATGGCTGTTGATGTTCAGAGGGTAGGGGACTACTCATGGTACCTTCATGACATGTGGATGCTACCTCTGCAGATTGTTCTTGCCCTTGTAATTTTGTATAAGAATGTTGGAATTGCTTTTGTTGCAACATTGTTTGCTACAATCATTTCCATTGTTGTCACTATTCCGGTGGCTAGGATACAAGAAGAATATCAAGACAAGTTAATGACTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGTCTGAGAAATATGAGGATTCTCAAGTTGCAAGCTTGGGAGGATAGATATAGAATAAGATTGGAGGAAATGCGAGGAGTAGAGTACAAGTGGTTAAGGAAAGCACTCTATTCTCAGGCTTTCATAACTTTCATATTTTGGAGTTCGCCTATATTTGTTTCAGCCGTCACATTTGCTACTACCATCTTGTTAGGAACTCAGCTGACTGCAGGTGGTGTTCTCTCTGCACTAGCTACTTTCAGGATTCTTCAAGAACCACTCAGAAATTTTCCCGATTTGGTATCAACCATGGCTCAGACAAAGGTTTCTCTTGATCGCATATCTGGTTTCCTACAGGACGACGAACTGCGGGAAGATGCAACTACCGTTTTGCCACGTGGAACTTCTAACATTGCCATAGAAATTATGGATGGTGCCTTCTGCTGGGACACTTCTTCCTCCAGGCCTACCCTATCCGGAATAAATATGAAAGTTGAAAGGGGGATGAGTGTAGCTATTTGTGGCATGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCAAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCTGCTGCATATGTCTCCCAATCAGCTTGGATACAATCAGGAAATATAGAAGAAAATATTCTGTTTGGAAACCAAATGGATAAAGCAAAGTACAAGAGTGTTATTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGACCAAACAATTATTGGTGACAGAGGTATAAATTTGAGTGGTGGCCAGAAGCAGCGGATTCAGCTAGCACGAGCACTCTACCAAGATGCTGATATTTATCTCCTCGATGATCCCTTTAGTGCACTTGATGCGCACACTGGATCAGAATTATTCAGAGAGTATGTGTTGTCAGCGCTAGCAGATAAAACCGTCATTTTTGTGACCCATCAAGTTGAATTTCTTCCAGCTGCTGATATGATACTGGTTCTTAAAGAAGGCCACATCATACAGGCGGGAAAGTATGATGATCTTTTACAGGCAGGAACAGATTTTAGAACTCTTGTTTCAGCTCACCATGAAGCAATAGAGGCTATGGACATTCCTAATCACTCCTCCTCGGAAGATTCAGATGAAAATGAGTCCTTGGATGCATCTATTATGACCATGAAGAAATCTATTTCTTCTGTAAATATTAACAGTTTGGCGAAGGAAGTTCACGAGGGATCATCAGATCTTAAAGAAATAAAGGAAAAGAAGAAGACAAAACGCTCGAGAAAAAAACAGCTTGTTCAGGAAGAGGAAAGGGTTAGGGGTAGAGTCAACATGAAGGTTTACTTGTCTTACATGGCTGCCGCATATAAAGGCTTGTTGATTCCCCTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCCAGCAATTGGTGGATGGCTTGGGCAAATCCTCAAACAGAGGGAGACGAACCAAAAGTAGCTCCCACGACTCTTCTTCTTGTTTACATGGCCCTTGCCTTTGGAAGCTCATGCTTTATATTTGTAAGGGCTGTTCTCGTGGCTACGTTTGGCCTAGAAGCAGCGCAGAAGCTATTTTTCAACATGCTTAGAAGTATTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCCTGAATCGTGTTTCAGTTGATCAAAGTGTTGTGGATCTTGATATTCCTTTTAGACTTGGAGGGTTTGCTTCATCAACGATACAACTTATTGGCATTGTTGCGGTAATGTCAGAAGTTACATGGCAAGTTTTGCTCCTTGTAGTTCCAATGGCAATTGTTTGTTTATGGATGCAGAAATACTACATGGCTTCATCAAGGGAACTGGTACGCATTGTAAGCATCCAGAAATCTCCAATTATACAACTTTTTGGTGAATCAATTGCTGGAGCATCCACCATAAGAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGCATGGAATTACTTTCAACTTTTGTATTTGCTTTTTTGCATGGTTTTACTTGTGAGCTTTCCCCGTGGAACTATCGATCCCAGTATGGCTGGACTTGCCGTGACATATGGCCTGAATTTAAATGGACGCTTGTCTCGCTGGATACTTAGTTTTTGTAAGCTTGAAAATAAAATTATATCTATTGAAAGAATTTATCAGTACAGTCAAATTCCTAGTGAAGCACCACCAGTTATTGAAGTATCTCGCCCTCCGTCCTCATGGCCCGAGAATGGGACAATCCAACTAATTGATCTGAAGGTTCGTTACAAGGAAAATCTTCCTTTGGTTCTTCCTGGAGTATCCTGCACATTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGAAGTGGCAAATCTACTTTGATTCAGGCATTATTTCGACTGGTTGAACCAGCAACCGGGAGAATCCTTATAGACAACATTGATATCTCAGGAATTGGCCTTCATGACCTTCGCAGCCATTTGAGTATCATACCACAAGATCCAACCTTATTTGAAGGCACCATTCGAGGCAATCTTGATCCTCTTGAAGAGCATTCCGATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATCATCCGTGAGCAAGAACAAAAGCTTGATACACCAGTGCTAGAAAATGGTGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTTGGTCGAGCCCTACTCAAGCAGTCAAAGATACTTGTACTTGATGAAGCAACAGCATCTGTTGATTCTGCAACTGATAAGCTTATCCAGAAGGTTATCCGAGAAGAGTTCAGAGACTGCACTGTGTGCACTATTGCTCATCGTATTCCTACCGTTATTGACAGTGATCTTGTTCTGGTACTCAGTGATGGTCTAGTTGCAGAGTTTGACACCCCATTGAGGCTATTAGAAGATAAGTCATCCATGTTTTTGAAGTTGGTGACTGAATATTCATCGCGATCAAGTGGCATGCCGGATTTTTAA 4545 0.4073 MGIPQFLDKISSLPTLYSSQSLNNLSSTILGLSVLELAAVCVNLTLVVLFLFVVSVRKILVYKRIRIGKDSTSENDSPICSVIDGEITTTSDVSISVWFKLSMLSCFYVLFVQVLVLGFDLGAFIWGEANEKVVHWSLLSVPASQVLAWSVLSFSALNCKFKVLEKFPFLLRVWWLLSFFICLCTLYVDGRGVWLEGSKYFCSHVVANFAVTPALAFLGVVAIRGVTGIQIGRNFTLQEPLLVEEEELGCLKVTPYRDAGIFSLATLSWLNPLLSIGAKRPLELKDIPLVAPSDRAKASYKIVNLNWEKLKAENQNPSKQPSLAWALLKSFWKEAAVNAIFAGLNTLVSYVGPYMISYFVDFLGGKETFAHEGYILAGIFFSAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSSAKQSHTSGEIVNYMAVDVQRVGDYSWYLHDMWMLPLQIVLALVILYKNVGIAFVATLFATIISIVVTIPVARIQEEYQDKLMTAKDERMRKTSECLRNMRILKLQAWEDRYRIRLEEMRGVEYKWLRKALYSQAFITFIFWSSPIFVSAVTFATTILLGTQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLQDDELREDATTVLPRGTSNIAIEIMDGAFCWDTSSSRPTLSGINMKVERGMSVAICGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGNQMDKAKYKSVIHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRIQLARALYQDADIYLLDDPFSALDAHTGSELFREYVLSALADKTVIFVTHQVEFLPAADMILVLKEGHIIQAGKYDDLLQAGTDFRTLVSAHHEAIEAMDIPNHSSSEDSDENESLDASIMTMKKSISSVNINSLAKEVHEGSSDLKEIKEKKKTKRSRKKQLVQEEERVRGRVNMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDEPKVAPTTLLLVYMALAFGSSCFIFVRAVLVATFGLEAAQKLFFNMLRSIFHAPMSFFDSTPAGRILNRVSVDQSVVDLDIPFRLGGFASSTIQLIGIVAVMSEVTWQVLLLVVPMAIVCLWMQKYYMASSRELVRIVSIQKSPIIQLFGESIAGASTIRVLQLLSGSACAWNYFQLLYLLFCMVLLVSFPRGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIYQYSQIPSEAPPVIEVSRPPSSWPENGTIQLIDLKVRYKENLPLVLPGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPATGRILIDNIDISGIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIREQEQKLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDSATDKLIQKVIREEFRDCTVCTIAHRIPTVIDSDLVLVLSDGLVAEFDTPLRLLEDKSSMFLKLVTEYSSRSSGMPDF 1514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02780 1514 Pfam ABC transporter 1287 1433 IPR003439 GO:0005524
Trre2g02780 1514 Gene3D - 648 880 IPR027417 -
Trre2g02780 1514 CDD ABC_6TM_ABCC_D1 337 624 IPR044746 GO:0140359
Trre2g02780 1514 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 257 1505 - -
Trre2g02780 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 976 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre2g02780 1514 SUPERFAMILY ABC transporter transmembrane region 973 1251 IPR036640 GO:0005524|GO:0016020
Trre2g02780 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 872 IPR027417 -
Trre2g02780 1514 Gene3D ABC transporter type 1, transmembrane domain 935 1249 IPR036640 GO:0005524|GO:0016020
Trre2g02780 1514 Gene3D ABC transporter type 1, transmembrane domain 305 632 IPR036640 GO:0005524|GO:0016020
Trre2g02780 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 650 873 IPR003439 GO:0005524
Trre2g02780 1514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1260 1497 IPR027417 -
Trre2g02780 1514 FunFam ABC transporter C family member 3 1251 1503 - -
Trre2g02780 1514 CDD ABC_6TM_ABCC_D2 974 1243 IPR044726 GO:0140359
Trre2g02780 1514 Gene3D - 1252 1504 IPR027417 -
Trre2g02780 1514 MobiDBLite consensus disorder prediction 928 948 - -
Trre2g02780 1514 CDD ABCC_MRP_domain2 1266 1486 - -
Trre2g02780 1514 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1268 1502 IPR003439 GO:0005524
Trre2g02780 1514 FunFam ABC transporter C family member 10 319 632 - -
Trre2g02780 1514 FunFam ABC transporter C family member 5 635 882 - -
Trre2g02780 1514 Pfam ABC transporter transmembrane region 339 604 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre2g02780 1514 Pfam ABC transporter transmembrane region 976 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre2g02780 1514 Coils Coil 928 951 - -
Trre2g02780 1514 Pfam ABC transporter 668 802 IPR003439 GO:0005524
Trre2g02780 1514 SUPERFAMILY ABC transporter transmembrane region 325 635 IPR036640 GO:0005524|GO:0016020
Trre2g02780 1514 FunFam ABC transporter C family member 5 937 1171 - -
Trre2g02780 1514 ProSitePatterns ABC transporters family signature. 775 789 IPR017871 GO:0005524|GO:0016887
Trre2g02780 1514 SMART AAA_5 677 858 IPR003593 GO:0016887
Trre2g02780 1514 SMART AAA_5 1294 1479 IPR003593 GO:0016887
Trre2g02780 1514 CDD ABCC_MRP_domain1 650 849 - -
Trre2g02780 1514 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 339 616 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02780 Trre-Chr2 23999122 24005046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02780 650 908 Calmodulin-binding Proteins AT2G36910 28.623 2.05e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02780 - - cam:101514243 2514.57