Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02743 ATGAATCACTGTGTTCCAGATTTCGATTTTCATCATATCGATGATGATGAAGATCATTATCCTGTACATCTGTCAAAGAAACCTTCAACGCAACAAGACGATGAGATTATGGAACTGTTATGGCAAAACGGTCAAGTTGTGATGCAAAGCCAAAACCACCGCCAATTCAGAAAACCGCCATCACCTTCGCCGGCAACGAACAACACCGGCAATCGTGTGATTCCTGATCATAAAGTGATTCGATCTCCCGATGCAGAGAATTACAATATCAATCAACACTTGTTCATGCAAGAAGACGAAATGGCGTCGTGGCTTTTCGATTCAATGAATGAAGATCCTCCGTTCAACCGTCAAGATTTCAGCACAGAAACACTTTTTCATCCATCTGCCGGTGAGAAAAACGGCGGTGCTGTTATACAAGCAACGGTTCGTGAACCGGAGTTTCAACGGCAAACGAGACCGGCATCGGTGGCGGCTTCTCGGCCTCCGATTCATCCGGTGAGGAAGCCGGAACAGGCAGTGAATAGGAAACATAATTTCGCGCATTTTACTAACCACGGTAATGTGAGGAACGAACAAGGCGGTTCTTCGAGTTCGATGATTGCGGCGGGGAGGGAATCAACGGTGGTGGATTCATGTGAAACGCCGATCGTGACAGCGAAGACGTATTCCAGATTATCGGAAACGATCAGGAGCACGGCGGAAACTGGATTTGTTAGTGTGAGTACAGGCGGAAAAGCGGCGACATCGAACGGCGGAAGGGAGAGTACGACGACGATGGATATGACAGTGACGTCATCGCCTGATTGTTCAAGCGGGAGTGGTGAACCGGCTCAGAGAAAACCGGAGTTGGACCGGAAAAGGAAAGGTCGTGAACCGGAGGAATCTGAGTTTCAAAGCGAGGATGTTGATTTTGAATGTCAGGAAGAAAAAAAACAAGTCCGTGGATCTACATCATCTACAAAGAGATCCCGTGCTGCAGAGGTTCATAATCTATCAGAGAGGAAGCGTCGAGATAGGATCAACGAAAAGATGAAAGCTTTGCAAGAACTTATACCGCGGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATTGAATACTTGAAGTCATTGCAGCTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATGCAACAGTTTATGCCGACGATGGGAATGGGGATGGGAATGGGTTTGGGGATGGAAATGGGAATGAACAGACCGGTGATGCCATTTCCGAACATGTTAGCTAGTTCTCCTTTACCGGCAGCAACAGTAGCTGCTCAATTCGGACCAAGGTTCGGTATGCCTCCTTTCCATATGCCTCATGTTCCTGCAGCACCTGATTTAACCAGAATGCAAGCAGAAAATCAATCTGATAACCCTCTTAACTCCCTTGGTACTGTGCCTCCAGATCAATCACGCATCCCAAACCCAAACTTCACTGATCCTTACCAGCAATACCTAGGTCCACACCAGATGCAGCAATTAATGCAGGCAATGAACCAGCAAAATGTCAACATACAAGGTACCAGTAGGAACCAAGATAATTCACAAAAGCACCAGTCAGGTAAATTGCCAGTAGGGTTTTCTGATATCTTGTTTTATTGTATTCGTATGTTACAATAA 1662 0.4615 MNHCVPDFDFHHIDDDEDHYPVHLSKKPSTQQDDEIMELLWQNGQVVMQSQNHRQFRKPPSPSPATNNTGNRVIPDHKVIRSPDAENYNINQHLFMQEDEMASWLFDSMNEDPPFNRQDFSTETLFHPSAGEKNGGAVIQATVREPEFQRQTRPASVAASRPPIHPVRKPEQAVNRKHNFAHFTNHGNVRNEQGGSSSSMIAAGRESTVVDSCETPIVTAKTYSRLSETIRSTAETGFVSVSTGGKAATSNGGRESTTTMDMTVTSSPDCSSGSGEPAQRKPELDRKRKGREPEESEFQSEDVDFECQEEKKQVRGSTSSTKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGMQQFMPTMGMGMGMGLGMEMGMNRPVMPFPNMLASSPLPAATVAAQFGPRFGMPPFHMPHVPAAPDLTRMQAENQSDNPLNSLGTVPPDQSRIPNPNFTDPYQQYLGPHQMQQLMQAMNQQNVNIQGTSRNQDNSQKHQSGKLPVGFSDILFYCIRMLQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02743 553 PANTHER TRANSCRIPTION FACTOR PIF3 23 515 IPR044273 GO:0003700|GO:0006355
Trre2g02743 553 MobiDBLite consensus disorder prediction 279 296 - -
Trre2g02743 553 CDD bHLH_AtPIF_like 325 388 IPR047265 -
Trre2g02743 553 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Trre2g02743 553 MobiDBLite consensus disorder prediction 468 489 - -
Trre2g02743 553 Coils Coil 331 351 - -
Trre2g02743 553 Gene3D - 320 383 IPR036638 GO:0046983
Trre2g02743 553 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 391 IPR036638 GO:0046983
Trre2g02743 553 SMART finulus 331 380 IPR011598 GO:0046983
Trre2g02743 553 MobiDBLite consensus disorder prediction 242 274 - -
Trre2g02743 553 MobiDBLite consensus disorder prediction 149 173 - -
Trre2g02743 553 MobiDBLite consensus disorder prediction 49 74 - -
Trre2g02743 553 FunFam Basic helix-loop-helix transcription factor 320 383 - -
Trre2g02743 553 MobiDBLite consensus disorder prediction 49 73 - -
Trre2g02743 553 Pfam Helix-loop-helix DNA-binding domain 329 375 IPR011598 GO:0046983
Trre2g02743 553 MobiDBLite consensus disorder prediction 242 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02743 Trre-Chr2 23643861 23649281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02743 1 380 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.785 5.58e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g02743 HLH 8.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02743 - - tpra:123904923 776.548