Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02726 ATGGCGGCATCACGGCGGCTCCGGGACCTGCAATCCCAACCAGGAAACAAGATCTGCGTCGATTGTTCTCAGAAGAATCCACAGTGGGCATCAGTCTCCTACGGCATCTTCATGTGCCTTGAATGCTCCGGCAAGCACCGTGGTCTCGGCGTTCACATCTCCTTCGTCCGATCCGTCACCATGGATGCTTGGTCCGAAATCCAAATAAAAAAAATGGAAGCTGGTGGTAACGACAATCTCAACGCTTTCCTTGCACGATATTCAATTCCTAAGGAAACCGATATCGTTACAAAGTATAACACCAACGCCGCTTCCGTTTACCGTGACAGGATCCAAGCTATGGCAGAAGGTCGTCCATGGCGCGATCCGCCTGTTGTTAAGGAGAATTTAGGTTCCAAGGGGAGGCCGCCGCTGTCACAGACTCGTCGGAATAACGATTCCGCTTGGGATGATTGGGATGGAGAAGGAAATTCTGGAAGTTCCGTCGATGTGAGGAGTAAGTCGACTGGGGATTTCAGAAGCTTAAACGGCGGTGGTGCGCCGGTTAGATCGAGGTCGACGGAGGATATTTACACGCGGTCACAGTTAGAGGCTTCTGCGGCGAATAAAGAGGGATTCTTCGCGAAGAAGATGGCGGAGAATGAGTCGAAACCGGAAGGACTTCCGCCGTCACAAGGTGGGAAGTATGTTGGGTTTGGATCCAGTCCTGCTCCTTCACAAAGGAGTAATAATCCGCAAAACGACTATTTCTCTGTCGTTTCACAGGGGATTGGTAAGTTGTCACTGGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTAGCACTAAAGATATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACTGTCAGCGTTGTCACTCAAAAGACATCAGAAATTGGTCAAAGGACATGGGGTTTAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACTAAAGAGAACTCAAATTCGACTACTAATAACTGGCAACGAAATGAGAATGATAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCATTAGTTCTTCTACCGGAAGAGAACAATCTTCATCAGGGCAATTCAAAACTCATAGCTCAAACTCTTGGGATGATTGGGACCACAAAGATAGTTGGAAGGGAGAACCAACTAAAGGATCAACTCCTTATTCATCTGGTGGTCAGTCTGGTACTCACAATCCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCAGCTAAAGGATCGGCTCCTCATAATAATGATGCTGGTTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTCGATAATTTTTATAATGGTGCATCTAATAAGAAAACTCCTGGACATAACGGCAAATCAGATGATGCTTGGACAGGGGGTGGCTTTCTCTAA 1449 0.4686 MAASRRLRDLQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRIQAMAEGRPWRDPPVVKENLGSKGRPPLSQTRRNNDSAWDDWDGEGNSGSSVDVRSKSTGDFRSLNGGGAPVRSRSTEDIYTRSQLEASAANKEGFFAKKMAENESKPEGLPPSQGGKYVGFGSSPAPSQRSNNPQNDYFSVVSQGIGKLSLVAASAANVVQASTKDITSKVKEGGYDQKVNETVSVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSNSTTNNWQRNENDRNGYYQDFNQENKGISSSTGREQSSSGQFKTHSSNSWDDWDHKDSWKGEPTKGSTPYSSGGQSGTHNPSSWDDWDHKDSRKEEPAKGSAPHNNDAGWAGWDNAKDDGFDNFYNGASNKKTPGHNGKSDDAWTGGGFL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02726 482 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Trre2g02726 482 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Trre2g02726 482 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Trre2g02726 482 MobiDBLite consensus disorder prediction 415 433 - -
Trre2g02726 482 MobiDBLite consensus disorder prediction 380 394 - -
Trre2g02726 482 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 398 IPR044519 GO:0005096|GO:0016192
Trre2g02726 482 MobiDBLite consensus disorder prediction 118 189 - -
Trre2g02726 482 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Trre2g02726 482 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Trre2g02726 482 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Trre2g02726 482 MobiDBLite consensus disorder prediction 396 414 - -
Trre2g02726 482 MobiDBLite consensus disorder prediction 327 379 - -
Trre2g02726 482 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Trre2g02726 482 CDD ArfGap_ArfGap1 3 117 - -
Trre2g02726 482 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Trre2g02726 482 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Trre2g02726 482 MobiDBLite consensus disorder prediction 327 482 - -
Trre2g02726 482 MobiDBLite consensus disorder prediction 159 173 - -
Trre2g02726 482 MobiDBLite consensus disorder prediction 213 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02726 Trre-Chr2 23474722 23477454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02726 5 87 C2H2 Transcription Factor Family AT4G05330 48.810 9.84e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02726 K12492 - gmx:100806519 794.267