Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02716 | ATGGGAGACGAAGTTGTTTGTGTGCAAGCATTGGAAGATGAAAGAACAGAAAACAATGAGGAATCGAAGACGGAATTGAAGCGTGACTATGATCAATGCATTGCTGATACTGAACCAAATGTTTCTCCGAATAAAAAACAAGCAAAAGAAGTTTCGAACGATGAAGTGCGCTCTGAAGTTACAAATCCCAACGTTTCTGCAACAGAGCATGCACTAACCTTTCATGATATCAGTAGCCAACCCACAGAATCGGAAAATGTTAACCATGCAGAGTGTGGGGAACTTACGTCTACTTGTTTGGAAAATTCTAGTTCTCATGATACCGTGAGTGATGAAGCCGGTGATCGGAATAATGACAACGATAATGATAATAACAATAATAGTTCTCTGAATGATAAAAGTACGGATAGCAACGATGCAGTGATGTCCTGTGTTGTGATGGAAATCCCAAAGCCTAGTTCAACTGGTATTAGAAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATAATGATTATCAAACACCTGCTAGCTATACTGATGGCAATGGCTATGGCTATGGCCATGGCTATGGCTATCATGGGGATGATGAATATTTGGCAAGGGATGATTCTAATGGTGGGTTTTTAGAGACCTCATATGGCACGGGATATGTTCCTTATGAAGATTCAGATTTGTATTCCGGAAATATGGAATTGAAAATGTCAAAGAAAGTTGTCCCTAACAGCTTCCCCACAAATGTCAAGAAGCTGTTATCAACTGGTATCCTTGATGGAGCTGCAGTAAAATATATTTACAATCCCGGAAAGGTTGAGCTTGATGGGATTATTGGTGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGTTCAGTGCCTATGAGTTTGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCATATATTCCTAGAAAATGGAAAACCAATTTATAGCATCATACACGAAATAAAAACCACTCCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCTGGTTCATCTATCAACGAGGAATCCTTCCAGGTTTGGAAAGAAAGTCTCCTACAAAGCAACAGGAAGGTTCCAACTCATAAAGGCATGCGTCATACAAACAACAGTCAATATATAGAAAGTGCGAGCCACTTCTCATCTTCACGTGCCCGAAATCATTTTGAGCAGCAAATGTATGTGAACCAGACAACTGATGAGTGGAAACGAGTGGTGAAGAAGCCAAGCACATACACTTACAACTCAGGTATACTGCAGAAGAGAAGTTCTGATGGTTGCACTAAGAAAAGGGACAATGACTTGCACAGGTTACTTTTCATGCCTAATGGCCTTCCAGACGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAACTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGCTGTTGTGATGTAGAGATAAGCCCTTCACAGTTTGAAGCCCACGCTGGAATGGCGGCTAGACGTCAACCTTACCGCCACATATATACTTCCAATGGATTGACACTTCATGATATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACTACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGAGCCTTTCATGCAGCCTGCTTAGGATTACACAGTGTACCAGATAGTGGTTGGCACTGTCTCAATTGTAAAGATATTACTGGTGATGGGAGAGGTGTGAGGCCAATCATGATTCGGTTGACACGGGTTGATAAAGAACCAGAATATGAAATTGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATACATTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATTGGGCTAAGTGAGTTGGAAGAGCTTCCAAAGGATAAGTGGTTTTGTTGCGACGACTGTAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGATACTATACCATCTTCCTTGTCTGAACTAATAATTAGGAAGCACCAAGAGAGGGGATTATGTACGTATGGAAGCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCCGAGCATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGGGGAATGTACTGCATTGTTTTAATTGTGAATTCTATCGTAGTATCTGCCGGGCTTCTTCGAATTTTTGGTTGCAACATTGCTGAGCTTCCCTTGGTTGCTACAAGTAGAGAGCATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCGTGTATAGAGAGGTTGTTATCTTCTCTAAATGTAGAAAAGCTGGTGCTCCCTGCTGCAGGGGTTGCAGAGTCAATTTGGACTAAGAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTATCCAAATATCTGAAAGAGGTGCAGCTCACTCTCTTCAACAAAACTTCAGTGCTGGAGAAGACTGTGCAGGTGGCGACAGAATGA | 2652 | 0.4118 | MGDEVVCVQALEDERTENNEESKTELKRDYDQCIADTEPNVSPNKKQAKEVSNDEVRSEVTNPNVSATEHALTFHDISSQPTESENVNHAECGELTSTCLENSSSHDTVSDEAGDRNNDNDNDNNNNSSLNDKSTDSNDAVMSCVVMEIPKPSSTGIRKITFKFSKKKEDYDNDYQTPASYTDGNGYGYGHGYGYHGDDEYLARDDSNGGFLETSYGTGYVPYEDSDLYSGNMELKMSKKVVPNSFPTNVKKLLSTGILDGAAVKYIYNPGKVELDGIIGGGGYLCGCSMCSYSRVFSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTTPNSMPDEIIKNVAGSSINEESFQVWKESLLQSNRKVPTHKGMRHTNNSQYIESASHFSSSRARNHFEQQMYVNQTTDEWKRVVKKPSTYTYNSGILQKRSSDGCTKKRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDVEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGLHSVPDSGWHCLNCKDITGDGRGVRPIMIRLTRVDKEPEYEIGGCVVCRENDFSVDTFDDRTVIICDQCEKEYHVGCLRDIGLSELEELPKDKWFCCDDCNRIYVALQNSVSAGADTIPSSLSELIIRKHQERGLCTYGSMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGCNIAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGVAESIWTKKLGFHKMSEDQLSKYLKEVQLTLFNKTSVLEKTVQVATE | 883 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02716 | 883 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 529 | 604 | IPR013083 | - | |
Trre2g02716 | 883 | FunFam | PHD zinc finger protein | 610 | 670 | - | - | |
Trre2g02716 | 883 | ProSitePatterns | Zinc finger PHD-type signature. | 542 | 581 | IPR019786 | - | |
Trre2g02716 | 883 | ProSiteProfiles | Zinc finger PHD-type profile. | 539 | 584 | IPR019787 | - | |
Trre2g02716 | 883 | Gene3D | - | 709 | 876 | - | - | |
Trre2g02716 | 883 | SMART | PHD_3 | 611 | 668 | IPR001965 | - | |
Trre2g02716 | 883 | SMART | PHD_3 | 541 | 582 | IPR001965 | - | |
Trre2g02716 | 883 | SUPERFAMILY | FYVE/PHD zinc finger | 537 | 582 | IPR011011 | - | |
Trre2g02716 | 883 | ProSiteProfiles | Zinc finger PHD-type profile. | 609 | 670 | IPR019787 | - | |
Trre2g02716 | 883 | MobiDBLite | consensus disorder prediction | 100 | 137 | - | - | |
Trre2g02716 | 883 | SUPERFAMILY | FYVE/PHD zinc finger | 608 | 665 | IPR011011 | - | |
Trre2g02716 | 883 | FunFam | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein | 529 | 604 | - | - | |
Trre2g02716 | 883 | Pfam | PHD-finger | 541 | 582 | IPR019787 | - | |
Trre2g02716 | 883 | FunFam | PHD zinc finger protein | 759 | 866 | - | - | |
Trre2g02716 | 883 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Trre2g02716 | 883 | PANTHER | AUTOIMMUNE REGULATOR | 18 | 877 | - | - | |
Trre2g02716 | 883 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 610 | 670 | IPR013083 | - | |
Trre2g02716 | 883 | Pfam | Tify domain binding domain | 277 | 328 | IPR032308 | - | |
Trre2g02716 | 883 | Pfam | Tify domain binding domain | 475 | 524 | IPR032308 | - | |
Trre2g02716 | 883 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 767 | 853 | IPR016181 | - | |
Trre2g02716 | 883 | ProSitePatterns | Zinc finger PHD-type signature. | 612 | 667 | IPR019786 | - | |
Trre2g02716 | 883 | CDD | PHD1_AIRE | 541 | 581 | - | - | |
Trre2g02716 | 883 | MobiDBLite | consensus disorder prediction | 120 | 137 | - | - | |
Trre2g02716 | 883 | MobiDBLite | consensus disorder prediction | 8 | 34 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02716 | Trre-Chr2 | 23376213 | 23383572 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02716 | 1 | 883 | PHD Transcription Factor Family | AT3G53680 | 51.485 | 0.0 | 878 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Trre2g02716 | TDBD | 3e-15 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02716 | - | - | tpra:123904992 | 1615.13 |