Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02685 ATGATGAAGAGACAGAGAGAAAACGAAGAAAAAGAGAGCATAGATTTAGCAACAAATTTAATGCTACTCTCTTCTCATCGTACCCAACAAAACAACAACAAAACATTATTTGAGGGCAAAACATGTAACCGCAAATTCTCATCTTTTCAAGCACTAGGTGGTCACAGGGCAAGTCACAAGAAGCTGAAAATCAATTCAGAAGAAGCACTTAATAAAGTGATGAATATTAATAAAAATAAGCCCAAAATGCATGAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTAGGTGGACACATGAGAAGACATAGAATTAATAATGAAGGGTTTTCTTCATCTTCAATAAATTATCATCAAGTGATTGCAAAATCTACTCCTGTTTTGAAAAGATCGAATAGTAAGAGGATTATGTGCTTGGAATTGGACTTGAATTTGACACCTTTGGAAAATGATTTGAAGTTGTTGTTTGGAAATAAGGCACCTAGAGTAGATCTTTCCTTGTTCTGA 516 0.343 MMKRQRENEEKESIDLATNLMLLSSHRTQQNNNKTLFEGKTCNRKFSSFQALGGHRASHKKLKINSEEALNKVMNINKNKPKMHECSICGQEFKLGQALGGHMRRHRINNEGFSSSSINYHQVIAKSTPVLKRSNSKRIMCLELDLNLTPLENDLKLLFGNKAPRVDLSLF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02685 171 SMART c2h2final6 37 59 IPR013087 -
Trre2g02685 171 SMART c2h2final6 84 106 IPR013087 -
Trre2g02685 171 SUPERFAMILY beta-beta-alpha zinc fingers 37 106 IPR036236 -
Trre2g02685 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Trre2g02685 171 PANTHER ZINC FINGER PROTEIN ZAT5 3 154 - -
Trre2g02685 171 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Trre2g02685 171 Coils Coil 59 79 - -
Trre2g02685 171 Gene3D Classic Zinc Finger 8 108 - -
Trre2g02685 171 Pfam C2H2-type zinc finger 84 107 - -
Trre2g02685 171 Pfam C2H2-type zinc finger 40 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02685 Trre-Chr2 23092332 23092847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02685 2 168 C2H2 Transcription Factor Family AT2G37430 46.739 6.01e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02685 zf-C2H2_6 2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02685 - - cam:101495964 238.039