Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02659 ATGGTTATGGAAGAAACAACATCAACCATCATCATGGAAGCACTTTCAACTCTCACACCTTCCCACCTTACTCATCTCACAAACTCCATTCACTCATCCACCCGCCGCCACCACCGCCGTCTCACTTTCCTCCTCTCTTCCCCATCTCTCTTCTCTCTTAGCCTTCATTACCTCCACAAACTTTCTCTCTCCCAAAAAACTCTCCTCATTTCACGCCACCTCCTTTCCTGTCTACACCTCCTTACCCAATCCACCTCACCGCTTCCACCTCCGGTCTCAATCACCATGAGAGAACGTGAAATCGACGCTGTCTTGCTCCTTCTCCTCTTCTGCGAGACACATAAACACGACCCAGAAGCTCTAAACGCACCGTTTTGTCATTGGAGATTGAATTTGAGAAAAATCTTCTCTAATACATTACTGATGATGTCTTGTTCTTCTGCGCCACCGCTTGGGGGGTGTTTGGGATCTGTTTTGATTCCGTTTATCGAGACTGTGAGTCGGTGTTGGAGATTGGTGGGTGTTTTGGGTTGTGAAGAAGGGAAGGAAGTTAAAGAGGTGGCTGCTTCGGCGGCGACGGTGATTTCTTTGCCGGCGGTGGAAGTTAGTGTTGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGCTGGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTCTTGTCTTTGGAGAGATCCAACGGCTTTGGGAAATCTTAG 813 0.4895 MVMEETTSTIIMEALSTLTPSHLTHLTNSIHSSTRRHHRRLTFLLSSPSLFSLSLHYLHKLSLSQKTLLISRHLLSCLHLLTQSTSPLPPPVSITMREREIDAVLLLLLFCETHKHDPEALNAPFCHWRLNLRKIFSNTLLMMSCSSAPPLGGCLGSVLIPFIETVSRCWRLVGVLGCEEGKEVKEVAASAATVISLPAVEVSVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVLSLERSNGFGKS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02659 270 SUPERFAMILY RING/U-box 203 255 - -
Trre2g02659 270 Pfam Ring finger domain 208 250 IPR001841 -
Trre2g02659 270 CDD RING-H2_PA-TM-RING 208 250 - -
Trre2g02659 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 262 IPR013083 -
Trre2g02659 270 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Trre2g02659 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 254 - -
Trre2g02659 270 SMART ring_2 209 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02659 Trre-Chr2 22864897 22865709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02659 3 260 C3H Transcription Factor Family AT5G02750 45.926 3.43e-69 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02659 - - cam:101509295 384.415