Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02655 ATGGGTTGGATTCCATGTTCTGGAAGTTCCAACACTAAGAAGAAGAAGATAAAGAAGAAATTGGATGAAGTGAAGGATATGCATGATGGGAACAAAGCCAACCCAGAGAAACTGAAGAAGAATCCATCTATCAATTCCAAAAATTCCTCTAAAAATGGAGAGTCTGGACACATTGCTGCACAAACATTTCCTTTCCGTGAGTTAGCAACCGCTACTAGAAATTTTAGAGCAGAATGCCTTTTAGGTGAGGGAGGCTTTGGCAGAGTATACAAAGGGCATTTGGAAACTATTAATCAGACCGTTGCAATTAAGCAACTTGATCGAAACGGGCTACAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGCTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGGCATTAGGATCCTTGGAAGACCATTTACATGATCTTTCTCCTGGCAAGAAACGACTTGACTGGAGCACGAGAATGAAAATAGCTGCCGGGGCAGCAAAGGGGTTAGAGTATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGTTCTAACATTTTGCTTGGTGATGGTTATCATCCCAAGTTATCTGATTTTGGTTTGGCGAAAGTTGGTCCTGTGGGGGATAACACTCATGTATCAACTAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCCATGACAGGTCAACTGACTCTGAAGTCGGATGTTTATAGCTTTGGCGTAGTTCTTCTGGAAATAATTACAGGAAGGAAAGCAATTGACAATTCAAAATGTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCATTGTTTAAAGATCGAAGAAAATTCACACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCAAGAGGGCTGTACCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAAGCAAATATGCGTCCAGTTATAGCCGATGTTGTGACAGCTTTGAGTTACCTTGCTTCACAAAAATATCAGCCCAATATGCAGACTGTACAAAGCTCTCGCCTCGCTCCTGGTACTCCGCCTAGAACCAGGAGGGGAGTTTGA 1146 0.425 MGWIPCSGSSNTKKKKIKKKLDEVKDMHDGNKANPEKLKKNPSINSKNSSKNGESGHIAAQTFPFRELATATRNFRAECLLGEGGFGRVYKGHLETINQTVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMALGSLEDHLHDLSPGKKRLDWSTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGDGYHPKLSDFGLAKVGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKCAAEQNLVAWARPLFKDRRKFTQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYQPNMQTVQSSRLAPGTPPRTRRGV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02655 381 MobiDBLite consensus disorder prediction 16 36 - -
Trre2g02655 381 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Trre2g02655 381 Pfam Protein tyrosine and serine/threonine kinase 79 348 IPR001245 GO:0004672|GO:0006468
Trre2g02655 381 MobiDBLite consensus disorder prediction 38 56 - -
Trre2g02655 381 PANTHER OS07G0668900 PROTEIN 21 360 - -
Trre2g02655 381 MobiDBLite consensus disorder prediction 1 56 - -
Trre2g02655 381 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02655 381 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02655 381 Gene3D Transferase(Phosphotransferase) domain 1 152 370 - -
Trre2g02655 381 CDD STKc_IRAK 81 349 - -
Trre2g02655 381 FunFam Serine/threonine-protein kinase PBS1 152 367 - -
Trre2g02655 381 SUPERFAMILY Protein kinase-like (PK-like) 61 365 IPR011009 -
Trre2g02655 381 FunFam Serine/threonine-protein kinase PBS1 47 151 - -
Trre2g02655 381 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Trre2g02655 381 MobiDBLite consensus disorder prediction 362 381 - -
Trre2g02655 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02655 Trre-Chr2 22792651 22796232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02655 29 354 Glycoside Hydrolase AT3G07070 68.405 3.54e-167 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre2g02655 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02655 - - gmx:100776041 659.062