Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02652 ATGCCTCCGAAGCAATCAAAAGCTGATGTAGCGAAGAAGCAGAAGGTTGTAGAAGACAAAACTTTCGGTCTCAAGAACAAAAACAAAAGCAAAGCAGTTCAGAAATATGTTCAGAATCTCAAATCATCTGTGCAGCCCAAAATCGACCCCAAAGTCGATGCAAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTGAATGATCTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCAGCTGGTGTTGATCCCAAGTCTATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTGCTAAGGGCTTCAAATGCAAATTTTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATATATAGTGATAAGCGTGACGATGAAACAATGGAGGATTGGGATCAAGAGACATTGGAGAAAGTGGTGGAGTCGAAGAAAAATGAGTATAGTAATCAGAACAAACCAACTGACATTGTATGTAAACACTTTTTGGATGCGGTAGAGAGGAAGCAATATGGTTGGTTTTGGCAATGCCCCAACGGTGGTAAGAATTGTCACTATAGGCATGCACTTCCACCTGGGTATGTTTTAAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAAGCTGATAAAATGCCAATTGAGGAGGAGATTGAAAAGCAGCGTGCCCAAGTGAAAACTACAACTCCCATGACTCCTGAGTTGTTCATGCAATGGAAGAAGAAAAAGTTGGACGAGAGAGATGCGAGTTTGGCTGCCCAACAGGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGTGAGCTGTTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAAAGAGAACCGGAACCTGATGAAACTGAACAGAATGGGACTGGGAGTGCTGCTAATAATGGTCCCAGCACCTCAGCAGCAGGTGGTGCTGATGATGAAGTTCCTGATGACATTGATGACGATGATGATGATGATGAATTGGACTTGGATGAGTTAAATGAACTGGAAGCTAGTCTAGCCAAGACATCAATCCAAATTAATGAACCAGGAGCTGAAGCTTAA 1092 0.4258 MPPKQSKADVAKKQKVVEDKTFGLKNKNKSKAVQKYVQNLKSSVQPKIDPKVDAKKKKEEEKAKEKELNDLFKIAVSQPKVPAGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDDETMEDWDQETLEKVVESKKNEYSNQNKPTDIVCKHFLDAVERKQYGWFWQCPNGGKNCHYRHALPPGYVLKSQMKALLEEEADKMPIEEEIEKQRAQVKTTTPMTPELFMQWKKKKLDERDASLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPEPDETEQNGTGSAANNGPSTSAAGGADDEVPDDIDDDDDDDELDLDELNELEASLAKTSIQINEPGAEA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02652 363 SUPERFAMILY CCCH zinc finger 86 111 IPR036855 GO:0046872
Trre2g02652 363 Gene3D - 203 278 - -
Trre2g02652 363 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Trre2g02652 363 Gene3D - 85 202 - -
Trre2g02652 363 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 361 - -
Trre2g02652 363 MobiDBLite consensus disorder prediction 287 341 - -
Trre2g02652 363 Coils Coil 51 71 - -
Trre2g02652 363 SMART c3hfinal6 157 194 IPR000571 GO:0046872
Trre2g02652 363 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Trre2g02652 363 ProSiteProfiles Zinc finger C3H1-type profile. 157 195 IPR000571 GO:0046872
Trre2g02652 363 MobiDBLite consensus disorder prediction 322 341 - -
Trre2g02652 363 Pfam DRG Family Regulatory Proteins, Tma46 215 295 IPR032378 -
Trre2g02652 363 MobiDBLite consensus disorder prediction 300 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02652 Trre-Chr2 22767893 22771958 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre2g02652 DFRP_C 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02652 - - gmx:100806617 558.91