Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02651 ATGAACTCCAATTCTCACTCAATGGCAACACCAACATCAACACCAACTAGTGGTTGTGGAGATGCTTCTGGCAAGAAAATTAGAAAGCCATACACCATTACAAAGTCCAGAGAAAGCTGGTCTGACGAAGAACATGACAAGTTTCTAGAAGCTCTTCAATTATTTGATAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCCCAAAAGTACTTCTTAAAGGTTCAAAAAAATGGAACACTTGCGCATGTTCCTCCTCCTCGTCCTAAGCGTAAAGCTATTCATCCTTATCCACAAAAAGCAACCAAAAATGTTTTGGTGCCACTGCCAGCATCAATTGCTTATGGATCATCGACAAATAGCCTTTTACCTGCAGGGTATATCACATGGGATGAAAATTCCATGCTCATGGATACTTGTCAGGATGAACTCAACAATCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATTAGCAACAATGGTGTTGGAGACTCTACTACAAGGCTCAACGCTTCTCAAATACCAAATCAAGGGAAACAAAATTCGGTAACTCATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAATGGCCATGTACAGAAGCTTAAGGAAATGGATCCTATAAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAATTTGTCTAGCCCTAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGTGAATAACAACGATGCAGTAGGAGTTACTGATGTGAAGAAGCAGACAAATGATGTATCATGTCAAAACACTTAA 861 0.3868 MNSNSHSMATPTSTPTSGCGDASGKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAYGSSTNSLLPAGYITWDENSMLMDTCQDELNNLHGNEADIGSKGISNNGVGDSTTRLNASQIPNQGKQNSVTHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDVNNNDAVGVTDVKKQTNDVSCQNT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02651 286 SMART sant 36 84 IPR001005 -
Trre2g02651 286 Gene3D - 40 87 - -
Trre2g02651 286 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g02651 286 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Trre2g02651 286 FunFam protein REVEILLE 6 isoform X1 39 87 - -
Trre2g02651 286 Pfam Myb-like DNA-binding domain 37 82 IPR001005 -
Trre2g02651 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 84 IPR006447 GO:0003677
Trre2g02651 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 86 IPR017930 -
Trre2g02651 286 ProSiteProfiles Myb-like domain profile. 32 82 IPR001005 -
Trre2g02651 286 CDD SANT 39 82 IPR001005 -
Trre2g02651 286 ProSiteProfiles SANT domain profile. 35 88 IPR017884 -
Trre2g02651 286 MobiDBLite consensus disorder prediction 1 36 - -
Trre2g02651 286 ProSitePatterns EF-hand calcium-binding domain. 262 274 IPR018247 -
Trre2g02651 286 PANTHER SWI/SNF COMPLEX-RELATED 6 247 - -
Trre2g02651 286 MobiDBLite consensus disorder prediction 168 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02651 Trre-Chr2 22758040 22759944 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre2g02651 Myb_DNA-binding 4.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02651 - - gmx:100797466 431.409