Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02632 ATGGGAGCTGCCCGCAAGCTGAAGTCCCACCGCAGGAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCTCATCTTGGTAATGAATGGAAGAAGCCTTTTGCTGGTTCATCTCACGCAAAGGGAATTGTCCTTGAAAAGATTGGTATTGAAGCTAAGCAGCCCAACTCTGCTATTCGTAAGTGTGCCAGGGTTCAACTCATCAAGAATGGGAAGAAGATTGCTGCATTTGTTCCAAATGATGGTTGCTTAAACTACATCGAAGAAAATGATGAAGTTTTGATCGCTGGATTTGGAAGAAAGGGTCATGCTGTTGGTGATATTCCTGGAGTTAGATTCAAGGTTGTCAAGGTCTCTGGTGTATCTCTTCTTGCTCTCTTCAAGGAGAAGAAGGAGAAGCCTAGGTCTTAA 411 0.4453 MGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02632 136 Gene3D - 19 136 IPR012340 -
Trre2g02632 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre2g02632 136 FunFam 40S ribosomal protein S23 19 136 - -
Trre2g02632 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 10 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre2g02632 136 MobiDBLite consensus disorder prediction 1 23 - -
Trre2g02632 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre2g02632 136 NCBIfam 30S ribosomal protein S12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Trre2g02632 136 Pfam Ribosomal protein S12/S23 25 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre2g02632 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Trre2g02632 136 MobiDBLite consensus disorder prediction 1 19 - -
Trre2g02632 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02632 Trre-Chr2 22620706 22621342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02632 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.588 1.18e-91 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02632 K02973 - gmx:100306064 275.789