Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02617 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTTGAATCCTCTGATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCCGATCAACAGCGTCTCATCTTCGCCGGTAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAACATCCAAAAGGAATCAACACTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCAAATCTTCGTCAAAACCCTAACAGGCAAAACCATCACACTCGAAGTCGAATCCTCCGACACAATCGACAACGTGAAGGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAACGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCTGATTATAATATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGATTGCGTGGTGGAATGCAGATATTTGTGAAGACTTTGACGGGGAAAACGATTACTCTTGAGGTGGAGAGTTCTGATACTATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGGATTCCACCTGATCAGCAGAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGGACTCTTGCTGATTATAATATTCAGAAAGAATCTACACTTCACCTTGTTCTCAGGCTTCGTGGCGGTGCCGATTTATAA 696 0.4526 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGADL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02617 231 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trre2g02617 231 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre2g02617 231 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre2g02617 231 FunFam Polyubiquitin 3 153 228 - -
Trre2g02617 231 Gene3D - 77 153 - -
Trre2g02617 231 Gene3D - 154 230 - -
Trre2g02617 231 Gene3D - 1 76 - -
Trre2g02617 231 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Trre2g02617 231 FunFam Polyubiquitin 3 1 76 - -
Trre2g02617 231 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Trre2g02617 231 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Trre2g02617 231 PANTHER UBIQUITIN 77 154 - -
Trre2g02617 231 CDD Ubl_ubiquitin 1 76 - -
Trre2g02617 231 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Trre2g02617 231 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trre2g02617 231 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Trre2g02617 231 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Trre2g02617 231 CDD Ubl_ubiquitin 77 152 - -
Trre2g02617 231 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Trre2g02617 231 CDD Ubl_ubiquitin 153 228 - -
Trre2g02617 231 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre2g02617 231 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre2g02617 231 SMART ubq_7 77 148 IPR000626 GO:0005515
Trre2g02617 231 SMART ubq_7 153 224 IPR000626 GO:0005515
Trre2g02617 231 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre2g02617 231 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Trre2g02617 231 FunFam Polyubiquitin 3 77 152 - -
Trre2g02617 231 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02617 Trre-Chr2 22519312 22520007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02617 1 78 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 97.436 6.12e-49 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02617 K08770 - nnu:104600917 444.506