Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g02616 | ATGAGCGTAATCGACCTTCTAACTCGAGTTGATTCCATTTGCAAAAAGTACGACAAATACGACATCGAAAAGCACAAGGATGCCAATGTCTCCGGCGACGATGCTTTCGTCAGACTCTACTCTTCTGTCAACTCCGACATCGAATCCCTAATTCAGAAAGCAGAAACAGCTTCCAAGGATAGAGGGAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGCACTAAGGCTCGGTTGTTGGAGGAAGTTCCCAAGTTGCAGAGGTTGGCTGTCAAAAAGGTAAAAGGGCTTTCGTCGCAAGAATTTGCTGCACGTAATGATCTTGTTCTTGCATTACCAGAAAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCACCAAAACAAACCGGTGGTTGGGCATCTTCTGGCTCACGCGCTGAAATTAAATTTGATTCGGATGGCCGATTTGATGACGAGTACTTTCAATCAACTGATCAATCAAACCAATTCAGGCAGGAATATGAAATGCGTAGAATAAAACAGGCAAGTTTGGATGTGATTGCAGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAACGAGGAACTGGATAGACAAGTTCCCTTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCGTCTGATCTTAAGAATACTAATGTTAGACTTAAAGACACAGTGAATCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTCTGGGAATTGCTGCCTACTTATACAAGTAA | 783 | 0.4291 | MSVIDLLTRVDSICKKYDKYDIEKHKDANVSGDDAFVRLYSSVNSDIESLIQKAETASKDRGKASAVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAAPKQTGGWASSGSRAEIKFDSDGRFDDEYFQSTDQSNQFRQEYEMRRIKQASLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYK | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g02616 | 260 | PANTHER | SYNTAXIN | 43 | 251 | IPR045242 | - | |
| Trre2g02616 | 260 | ProSitePatterns | Syntaxin / epimorphin family signature. | 175 | 214 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Trre2g02616 | 260 | SMART | tSNARE_6 | 164 | 231 | IPR000727 | - | |
| Trre2g02616 | 260 | Gene3D | - | 177 | 240 | - | - | |
| Trre2g02616 | 260 | FunFam | Putative syntaxin-71-like | 170 | 230 | - | - | |
| Trre2g02616 | 260 | CDD | SNARE_Qc | 179 | 229 | - | - | |
| Trre2g02616 | 260 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 169 | 231 | IPR000727 | - | |
| Trre2g02616 | 260 | Pfam | SNARE domain | 206 | 255 | IPR000727 | - | |
| Trre2g02616 | 260 | SUPERFAMILY | SNARE fusion complex | 175 | 229 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g02616 | Trre-Chr2 | 22503208 | 22504985 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g02616 | 1 | 259 | SNARE and Associated Proteins | AT3G09740 | 74.046 | 1.93e-146 | 409 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g02616 | K08506 | - | gmx:100819272 | 433.721 |